The TropGeneDB CIRAD information system contains various kinds of data on tropical and mediterranean plants : marker, QTL, genotype, genetic, phenotype, cartography (genetic, physical and linkage disequilibrium maps), linkage disequilibrium, association and germplasm. The plants concerned are banana, breadfruit, citrus, cocoa, coconut palm, cotton, oil palm, rice, rubber, sorghum and sugarcane. The Information System has a database per plant. The data were produced by CIRAD researchers or by CIRAD researchers and colleagues associated in research projects. All The data have been published. The latest reference for TropGeneDB is : Chantal Hamelin, Guilhem Sempere, Vincent Jouffe and Manuel Ruiz, (2012), "TropGeneDB, the multi-tropical crop information system updated and extended", Nucl. Acids Res. (2012), doi: 10.1093/nar/gks1105. As there have been no new developments on TropGeneDB and it is unlikely that the system will be maintained in the long term, we have extracted all the data that we have deposited in the Dataverse.