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Data_Integration_Team (CIRAD-Centre de coopération internationale en recherche agronomique pour le développement)
Nos travaux de recherche concernent la représentation des connaissances et l’intégration des données en génomique végétale, qui plus que jamais est nécessaire puisque l’arrivée des nouvelles méthodes de séquençage à très haut débit (NGS) accentue les problématiques liées à cette thématique. Nous abordons aussi les défis posés par la représentation des connaissances multi-échelles : génome, cellule, plante, population et environnement.
Our research work concerns knowledge representation and the integration of plant genomics data, which is more necessary than ever, as the advent of new very high-throughput sequencing methods (NGS) is heightening the problems associated with this topic. We also tackle the challenges raised by the representation of multi-scale knowledge: genome, cell, plant, population, and environment.
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Jul 4, 2019
de Lamotte, Frédéric, 2019, "Functional Annotation for 797 plant ns Lipid Transfer Protein", https://doi.org/10.18167/DVN1/1O5UAK, CIRAD Dataverse, V1
This is the list of all the functional annotations about the 797 nsLTP sequences used for our work "Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its Sequence – Structure – Function analysis". It might be useful for any studies...
Jun 26, 2019
de Lamotte, Frédéric, 2019, "797 sequences of plant ns Lipid Transfer Protein (fasta file)", https://doi.org/10.18167/DVN1/UNKLA6, CIRAD Dataverse, V1
This is the list of all nsLTP sequences used for our work "Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its Sequence – Structure – Function analysis". It might be useful for any studies in phylogeny (this is the largest dataset...
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