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Molecular epidemiology of Ralstonia pseudosolanacearum Phylotype I strains in the South West Indian Ocean region and their relatedness to African strains
28 juin 2023
Cellier, Gilles; Nordey, Thibault; Cortada-Gonzales, Laura; Gauche, Mirana; Rasoamanana, Hasina; Yahiaoui, Noura; Rébert, Emeline; Prior, Philippe; Chéron, Jean Jacques; Poussier, Stéphane; Pruvost, Olivier, 2022, "Molecular epidemiology of Ralstonia pseudosolanacearum Phylotype I strains in the South West Indian Ocean region and their relatedness to African strains", https://doi.org/10.18167/DVN1/BYBKB3, CIRAD Dataverse, V3, UNF:6:Zhd8a63RwtCAOKvU4ndGZQ== [fileUNF]
Increasing requirements for developing tools allowing fine traceability of strains responsible for epidemics is tightly linked with the need to understand factors shaping pathogen populations and their interactions with their environment. Bacterial wilt (BW) caused by the Ralston...
Description of the draft genome sequences of 284 Xanthomonas citri pv. citri strains causing Asiatic citrus canker
31 mai 2023
Richard Damien; Rieux Adrien; Lefeuvre Pierre; Hamza Azali; Kumar Lobin Kanta; Naiken Mark; Stravens Randy; Boyer Claudine; Boyer Karine; Javegny stéphanie; Pruvost Olivier, 2020, "Description of the draft genome sequences of 284 Xanthomonas citri pv. citri strains causing Asiatic citrus canker", https://doi.org/10.18167/DVN1/TOVWWL, CIRAD Dataverse, V2, UNF:6:S0AI4RoC3a2UsXuKHJlJpw== [fileUNF]
Details of the genome assembly of 284 Xanthomonas citri pv. citri strains from a worldwide collection. Sequences were obtained using Illumina short read sequencing. Some isolates were also sequenced using Nanopore long read sequencing.
Ralstonia solanacearum species complex egl reference database
11 avr. 2023
Cellier, Gilles; Pecrix, Yann; Gauche, Miharisoa Mirana; Cheron, Jean Jacques, 2023, "Ralstonia solanacearum species complex egl reference database", https://doi.org/10.18167/DVN1/CUWA5P, CIRAD Dataverse, V1, UNF:6:1viNVcRu+ed5IadFDhvWSg== [fileUNF]
This database centralizes partial endoglucanase (egl) gene sequences dedicated to the Ralstonia solanacearum species complex phylogenetic inference. Methodology (primers, sequence trimming...) are included. New sequences will be added as soon as they will be available or submitte...
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