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21 to 30 of 64 Results

AATTOL_IPA_EdgeR_108b_Nested_Comp15_DisFun.tab 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Tabular Data - 293,3 KB - 16 Variables, 2653 Observations - UNF:6:99YQhS7ZgnnpkQOfn7GBLQ== Data Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the diseases and functions, two sheets
AATTOL_IPA_EdgeR_108b_Nested_Comp15_UpStream.tab 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Tabular Data - 254,8 KB - 16 Variables, 3774 Observations - UNF:6:qMmVU3QvR12K8sjIWutGRw== Data Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the upstream regulators, two sheets
AATTOL_IPA_edger_659g_allBreeds_13107_nested.tab 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Tabular Data - 82,3 KB - 9 Variables, 164 Observations - UNF:6:DIKzyup99IhhktufmtdQ3Q== Data Output from IPA analysis for the input file edger_659g_allBreeds_13107_nested_IN_IPA.txt, three sheets
AATTOL_Readme.docx 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance MS Word - 16,9 KB - MD5: 79edef0eca494b8a30727c98ce95b253 Documentation readme
AATTOL_Readme.txt 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Plain Text - 9,5 KB - MD5: 81f914549f8c26b93fe18aa8181665ac Documentation It lists the files present in the dataverse, and provides a short description.
AATTOL_R_script_RNAseq_STAR108_EgdeR.r 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance R Syntax - 15,9 KB - MD5: eeb3c7989b88e2317e450c3c1c2557f9 Code script: R script to run the differential expression analysis
AATTOL_Samples1_120_star.tab 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Tabular Data - 7,1 KB - 1 Variables, 120 Observations - UNF:6:d2vj13X0WIdL2wc8Oo0iVw== Data data: Sample information for statistical analysis (121 raw * 10 columns), used in AATTOL_R_script_RNAseq_STAR108_EgdeR.r
configStar 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Plain Text - 4,6 KB - MD5: 54d098e568bc7846a3de65fa03edfe22 Code script: File configuration to run the script process_RNAseq_AATTOL.py
edger_659g_allBreeds_13107_nested_IN_IPA.txt 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Plain Text - 593,6 KB - MD5: a23ce246bc6463a3a9fd220ccdd920ae Data Result of the differential expression analysis synthetizing common differential expressed genes during infection in the breeds (13108 raws * 4 columns) -> input table in IPA®
edger_BAO_3DPI_0_13107_nested_IN_IPA.txt 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Plain Text - 1,9 MB - MD5: ddbc0bdacc688679d88267f5bc4d3f27 Data Output table for the within -breed differential expression analysis in BAO (13108 raws * 8 columns) -> input table in IPA®

AATTOL_IPA_EdgeR_108b_Nested_Comp15_DisFun.tab

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

Tabular Data - 293,3 KB - 16 Variables, 2653 Observations -

Data

Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the diseases and functions, two sheets

AATTOL_IPA_EdgeR_108b_Nested_Comp15_UpStream.tab

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

Tabular Data - 254,8 KB - 16 Variables, 3774 Observations -

Data

Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the upstream regulators, two sheets

AATTOL_IPA_edger_659g_allBreeds_13107_nested.tab

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

Tabular Data - 82,3 KB - 9 Variables, 164 Observations -

Data

Output from IPA analysis for the input file edger_659g_allBreeds_13107_nested_IN_IPA.txt, three sheets

AATTOL_Readme.docx

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

MS Word - 16,9 KB -

Documentation

readme

AATTOL_Readme.txt

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

Plain Text - 9,5 KB -

Documentation

It lists the files present in the dataverse, and provides a short description.

AATTOL_R_script_RNAseq_STAR108_EgdeR.r

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

R Syntax - 15,9 KB -

Code

script: R script to run the differential expression analysis

AATTOL_Samples1_120_star.tab

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

Tabular Data - 7,1 KB - 1 Variables, 120 Observations -

Data

data: Sample information for statistical analysis (121 raw * 10 columns), used in AATTOL_R_script_RNAseq_STAR108_EgdeR.r

configStar

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

Plain Text - 4,6 KB -

Code

script: File configuration to run the script process_RNAseq_AATTOL.py

edger_659g_allBreeds_13107_nested_IN_IPA.txt

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

Plain Text - 593,6 KB -

Data

Result of the differential expression analysis synthetizing common differential expressed genes during infection in the breeds (13108 raws * 4 columns) -> input table in IPA®

edger_BAO_3DPI_0_13107_nested_IN_IPA.txt

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

Plain Text - 1,9 MB -

Data

Output table for the within -breed differential expression analysis in BAO (13108 raws * 8 columns) -> input table in IPA®

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