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File Type: Code

21 to 30 of 36 Results

Filtering_Functions.R 2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525" R Syntax - 377 B - MD5: 7cc002154f0e34a37b6b53f1ad649fb4 Loading packages and functions required for R scripts for data filtering.
Nextfilters_and_reduction.R 2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525" R Syntax - 20,2 KB - MD5: 2ea6d5266bd97ee5195e4feff7a93b3a Second R script for data filtering. This script keeps positive data only if congruent between replicates (duplicates or triplicates) and filters data for extraction & pcr contamination following correction 1 from Galan et al. 2016 (Tcc) and using negative controls. It works on an...
R-analyses.R 2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525" R Source Code - 20,9 KB - MD5: 775e2f0bad561c40e36b19d1ec9219e0 R script for all statistical analyses (using R-data.xlsx).
Repfilter2.R 2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525" R Syntax - 4,0 KB - MD5: 551c279dc661537756cba1b89ba72472 R function required for the second R script for data filtering.
Tccfilter.R 2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525" R Syntax - 1,6 KB - MD5: 6c5f4b29437897c7c799dd81f24e31bc R function required for the second R script for data filtering.
Tfafilter.R 2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525" R Syntax - 1,3 KB - MD5: dbaf780fd41340ca2766594858d24f5f R function required for the first R script for data filtering.
analyze.bayesian.r 18 janv. 2023 - Original data for "Chapuis et al., 2023. Domestication provides durum wheat with protection from locust herbivory. Ecology and Evolution, 13(1): e9741" R Syntax - 12,2 KB - MD5: 8b73c36585b7ed8de08681be90e43c60 Code Wrapping code of BRugs package functions.
RScript_statistical_analyses.R 18 janv. 2023 - Original data for "Chapuis et al., 2023. Domestication provides durum wheat with protection from locust herbivory. Ecology and Evolution, 13(1): e9741" R Source Code - 18,6 KB - MD5: 071a44066d29b88431f8b05836d91dc9 R script to perform for all statistical analyses reported in this study.
L3_GCMS_analysis.R 9 nov. 2022 - Original data used in Vernier et al.'s work: "Faeces' odours attract gregarious locust hoppers" R Syntax - 7,9 KB - MD5: e4913e31513b11b5849ec798c86c6ca3 CodeGC-MSR R script for GC-MS analysis.
L3_GCMS_filters.R 9 nov. 2022 - Original data used in Vernier et al.'s work: "Faeces' odours attract gregarious locust hoppers" R Syntax - 3,8 KB - MD5: a0834b9f20351b50442b49d050bd74fe CodeGC-MSR R script to filter VOCs.

Filtering_Functions.R

2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525"

R Syntax - 377 B -

Loading packages and functions required for R scripts for data filtering.

Nextfilters_and_reduction.R

2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525"

R Syntax - 20,2 KB -

Second R script for data filtering. This script keeps positive data only if congruent between replicates (duplicates or triplicates) and filters data for extraction & pcr contamination following correction 1 from Galan et al. 2016 (Tcc) and using negative controls. It works on an...

R-analyses.R

2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525"

R Source Code - 20,9 KB -

R script for all statistical analyses (using R-data.xlsx).

Repfilter2.R

2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525"

R Syntax - 4,0 KB -

R function required for the second R script for data filtering.

Tccfilter.R

2 mai 2023 - Original data for " Chapuis MP et al. (2023). Evaluation of 96-well high-throughput DNA extraction methods for 16S rRNA gene metabarcoding. Molecular Ecology Resources, 23, 1509–1525"

R Syntax - 1,6 KB -

R function required for the second R script for data filtering.