UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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81 to 90 of 439 Results

LiEtAl_Cov_100000.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 2,0 MB - MD5: e0a0a0a883e11239825e49831e336bd6 svg file of Grande Naine illumina read coverage along Cavendish assembli of Li et al., 2023
Lietal_Zebrina.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 512,1 MB - MD5: 356ea3c0eb07e9b318429a49683cbb73 M.a. ssp zebrina assembly from Li et al., 2023
M_2_regions.phy_phyml_tree.txt.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 9,3 KB - MD5: 472ed877e18eca6d2be0004d8b106a00 svg file of the phylogenetic tree obtained on the 10635 concatenated alignments using phyML v3.1
Mabur.2.0_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 33,0 KB - MD5: bec3641208d13a6102885e5048954a79 png file obtained from chromosome ancestry painting of M.a. ssp burmannica
Mabur.2.0_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 232,7 KB - MD5: d05a9664b97d4a78ab92b27b17afb46d Tabulated file with M.a. ssp burmannica assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)
Mabur.2.0.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 489,7 MB - MD5: cb2624c4818fd6ec45fde719cab6a1a5 M.a. ssp burmannica assembly in multifasta file
Mabur.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 62,1 MB - MD5: 2d196c6d95fcec39746e2bd7b87ebdb8 M.a. ssp burmannica annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
Macmad_h1.1.0_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 53,7 KB - MD5: 6ec343c08dac3f054db145b55a03019f png file obtained from chromosome ancestry painting of Pisang Madu H1
Macmad_h1.1.0_100000_count.MajR.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 924,1 KB - MD5: 61a0fa0978bc6460ac800dc9d7e1955d svg file obtained from chromosome ancestry painting of Pisang Madu H1
Macmad_h1.1.0_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 243,4 KB - MD5: e9055c461c08cb4c2306c530360dec76 Tabulated file with assembly origin painting to construct chromosome scale figures(6 columns: Name, Chr, start, end, origin, color)

LiEtAl_Cov_100000.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 2,0 MB -

svg file of Grande Naine illumina read coverage along Cavendish assembli of Li et al., 2023

Lietal_Zebrina.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 512,1 MB -

M.a. ssp zebrina assembly from Li et al., 2023

M_2_regions.phy_phyml_tree.txt.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 9,3 KB -

svg file of the phylogenetic tree obtained on the 10635 concatenated alignments using phyML v3.1

Mabur.2.0_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 33,0 KB -

png file obtained from chromosome ancestry painting of M.a. ssp burmannica

Mabur.2.0_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 232,7 KB -

Tabulated file with M.a. ssp burmannica assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

Mabur.2.0.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 489,7 MB -

M.a. ssp burmannica assembly in multifasta file

Mabur.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 62,1 MB -

M.a. ssp burmannica annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

Macmad_h1.1.0_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 53,7 KB -

png file obtained from chromosome ancestry painting of Pisang Madu H1

Macmad_h1.1.0_100000_count.MajR.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 924,1 KB -

svg file obtained from chromosome ancestry painting of Pisang Madu H1

Macmad_h1.1.0_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 243,4 KB -

Tabulated file with assembly origin painting to construct chromosome scale figures(6 columns: Name, Chr, start, end, origin, color)

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