UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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41 to 50 of 400 Results

Group_rDNA_and_REPEATS.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 2,4 KB - MD5: e3afde986f2781e07ede282894f7b3ca tabulated file to draw repeat density per family (2 columns : Sequence name, sequence group)
Haplotypes.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 342,1 KB - MD5: 108866e2890c724d6f3335c2f4274368 Haplotype chromosome painting layer for circos representation (4 columns: chr, start, end, color)
HuangEtal_Baxijiao.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 1,3 GB - MD5: bde63c88750632b817361905de885b4b Multifasta of Cavendish assembly from Huang et al., 2023
karyotype_all_norm_center.pdf 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Adobe PDF - 437,9 KB - MD5: c31912078a560e82e370c8038383b3ba Source data for Chromosome synthenic block identified between assemblies using jcvi v1.1.18
karyotype.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 604,5 KB - MD5: 54f8328c71d233d09e47eeeba76d4182 Configuration file containing source data for Fig.6 Karyotype information for circos representation.
Lietal_Baxijiao_All.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 2,0 MB - MD5: f14cba32311fa83008b92b9ca3f8d146 Ancestry chromosome painting of Cavendish assembly from Li et al., 2023
LiEtAl_Baxijiao.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 1,2 GB - MD5: 5f436a0cb06b0f14450ece34850a64b4 Multifasta of Cavendish assembly from Li et al., 2023
LiEtAl_Cov_100000.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 2,0 MB - MD5: e0a0a0a883e11239825e49831e336bd6 svg file of Grande Naine illumina read coverage along Cavendish assembli of Li et al., 2023
Lietal_Zebrina.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 512,1 MB - MD5: 356ea3c0eb07e9b318429a49683cbb73 M.a. ssp zebrina assembly from Li et al., 2023
M_2_regions.phy_phyml_tree.txt.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 9,3 KB - MD5: 472ed877e18eca6d2be0004d8b106a00 svg file of the phylogenetic tree obtained on the 10635 concatenated alignments using phyML v3.1

Group_rDNA_and_REPEATS.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 2,4 KB -

tabulated file to draw repeat density per family (2 columns : Sequence name, sequence group)

Haplotypes.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 342,1 KB -

Haplotype chromosome painting layer for circos representation (4 columns: chr, start, end, color)

HuangEtal_Baxijiao.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 1,3 GB -

Multifasta of Cavendish assembly from Huang et al., 2023

karyotype_all_norm_center.pdf

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Adobe PDF - 437,9 KB -

Source data for Chromosome synthenic block identified between assemblies using jcvi v1.1.18

karyotype.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 604,5 KB -

Configuration file containing source data for Fig.6 Karyotype information for circos representation.

Lietal_Baxijiao_All.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 2,0 MB -

Ancestry chromosome painting of Cavendish assembly from Li et al., 2023

LiEtAl_Baxijiao.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 1,2 GB -

Multifasta of Cavendish assembly from Li et al., 2023

LiEtAl_Cov_100000.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 2,0 MB -

svg file of Grande Naine illumina read coverage along Cavendish assembli of Li et al., 2023

Lietal_Zebrina.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 512,1 MB -

M.a. ssp zebrina assembly from Li et al., 2023

M_2_regions.phy_phyml_tree.txt.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 9,3 KB -

svg file of the phylogenetic tree obtained on the 10635 concatenated alignments using phyML v3.1

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