UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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31 to 40 of 400 Results

DH-Pahang.4.3.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 42,2 MB - MD5: fa5f1899e3c72fce54db883de010fa7e DH-Pahang annotation transfered with liftoff v1.6.3 to other assembies
DH-Pahang.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 63,3 MB - MD5: d866bd52bbf36ac646c43ecb53dce5fa M.a. ssp malaccensis reference annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
DYN104_Grande_Naine_1x.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 158,2 KB - MD5: 2f76b8ef9cbb23d915339c1afd6036b2 Ancestry painting of the 1x gamete contributing to Cavendish projected along DH-Pahang structure from Martin et al., 2023
DYN_2013-098_Mshia_Wa_Komba.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 196,5 KB - MD5: 1a1606028e35efa5764b3a5d2725453f Ancestry painting of the 2x gamete contributing to Cavendish projected along DH-Pahang structure from Martin et al., 2023
Ensete_glaucum.1.0_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 45,6 KB - MD5: 22e3ef61efe662bcdf6d5efd41a60624 png file obtained from chromosome ancestry painting of E. glaucum
Ensete_glaucum.1.0_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 96,0 KB - MD5: fce0a2e3537dc9ec92dd2f45ddc56895 Tabuled file with E. glaucum assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)
Ensete_glaucum.1.0.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 466,9 MB - MD5: 567e8bb2f96a1a691a324083f6e720c7 E. glaucum assembly in multifasta file
Ensete_glaucum.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 57,1 MB - MD5: 352246db9cf2dbb3548cb04fa61c372b E. glaucum annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene
Gam_Lietal_Baxijiao_All.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 1,9 MB - MD5: 9a1c67a943acfa27b81cfcfd42c64696 Haplotype chromosome painting of Cavendish assembly from Li et al., 2023
GeneAlignments.tar.gz 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Gzip Archive - 11,4 MB - MD5: f232eecada13a3fe6d9a14c626b72c8a 10635 orthologous gene CDS alignments used for phylogenetic analysis using phyML v3.1

DH-Pahang.4.3.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 42,2 MB -

DH-Pahang annotation transfered with liftoff v1.6.3 to other assembies

DH-Pahang.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 63,3 MB -

M.a. ssp malaccensis reference annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

DYN104_Grande_Naine_1x.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 158,2 KB -

Ancestry painting of the 1x gamete contributing to Cavendish projected along DH-Pahang structure from Martin et al., 2023

DYN_2013-098_Mshia_Wa_Komba.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 196,5 KB -

Ancestry painting of the 2x gamete contributing to Cavendish projected along DH-Pahang structure from Martin et al., 2023

Ensete_glaucum.1.0_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 45,6 KB -

png file obtained from chromosome ancestry painting of E. glaucum

Ensete_glaucum.1.0_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 96,0 KB -

Tabuled file with E. glaucum assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

Ensete_glaucum.1.0.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 466,9 MB -

E. glaucum assembly in multifasta file

Ensete_glaucum.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 57,1 MB -

E. glaucum annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene

Gam_Lietal_Baxijiao_All.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 1,9 MB -

Haplotype chromosome painting of Cavendish assembly from Li et al., 2023

GeneAlignments.tar.gz

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Gzip Archive - 11,4 MB -

10635 orthologous gene CDS alignments used for phylogenetic analysis using phyML v3.1

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