UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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21 to 30 of 406 Results

BanksiiAncestryPaintingFilesOnPool.tar.gz 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Gzip Archive - 168,8 KB - MD5: 592eda7e35f83461d41fe29af71232c4 Archive of tabulated files counting the number of pooled ancestral tags (kmer and Martin et al., 2023) located along the M. a. ssp banksii assembly.
Banksii.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 61,1 MB - MD5: ac517f1d5d61b368657c3230e47f7d9f M.a. ssp banksii annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
ChromosomeTiles.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 957 B - MD5: 990b62203c63be2e4b092410b4eaf30d Ancestry chromosome painting layer for circos representation (4 columns: chr, start, end, color)
CIRCOS.conf 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Plain Text - 3,8 KB - MD5: ca65f1fcb2f9c9c4ab8d9a3e8f108b17 Circos configuration file used for circos v0.69-8 representation
circos_housekeeping.conf 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Plain Text - 1,7 KB - MD5: d5f41f0b498460ac7efa5c35b6370346 source file for Fig.6 Additionnal configuration file for circos representation
CIRCOS.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 24,0 MB - MD5: 9bf730aa7edeb6329a1503ed2a536dca source file for Fig.6 svg file generated by circos
Concat-HAPLO-origin-color.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 25,1 MB - MD5: b24371d081aa0432f60928e232178620 Tabulated file used to generate Supp. Fig.43 (6 columns: Name, contig, start, end, haplotype, color)
DH-Pahang.4.3_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 54,0 KB - MD5: c721e0e5c77da2ef4b5387fea89c6e7f png file obtained from chromosome ancestry painting of M.a. ssp malaccensis reference
DH-Pahang.4.3_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 221,0 KB - MD5: 8a1582e0821bfbc8173c9e8722e3c874 Tabuled file with M.a. ssp malaccensis reference assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)
DH-Pahang.4.3.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 464,8 MB - MD5: b4985be3ae1d95cdb940072a69f48f46 M.a. ssp malaccensis reference assembly in multifasta file

BanksiiAncestryPaintingFilesOnPool.tar.gz

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Gzip Archive - 168,8 KB -

Archive of tabulated files counting the number of pooled ancestral tags (kmer and Martin et al., 2023) located along the M. a. ssp banksii assembly.

Banksii.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 61,1 MB -

M.a. ssp banksii annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

ChromosomeTiles.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 957 B -

Ancestry chromosome painting layer for circos representation (4 columns: chr, start, end, color)

CIRCOS.conf

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Plain Text - 3,8 KB -

Circos configuration file used for circos v0.69-8 representation

circos_housekeeping.conf

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Plain Text - 1,7 KB -

source file for Fig.6 Additionnal configuration file for circos representation

CIRCOS.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 24,0 MB -

source file for Fig.6 svg file generated by circos

Concat-HAPLO-origin-color.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 25,1 MB -

Tabulated file used to generate Supp. Fig.43 (6 columns: Name, contig, start, end, haplotype, color)

DH-Pahang.4.3_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 54,0 KB -

png file obtained from chromosome ancestry painting of M.a. ssp malaccensis reference

DH-Pahang.4.3_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 221,0 KB -

Tabuled file with M.a. ssp malaccensis reference assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

DH-Pahang.4.3.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 464,8 MB -

M.a. ssp malaccensis reference assembly in multifasta file

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