UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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11 to 20 of 339 Results

3-Cav_dapi (3-8).tif 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. TIFF Image - 5,3 MB - MD5: 19f8f2963223ee2c4add9662571be4bd Original tif image of Grande Naine accession (Cavendish) chromosomes stained with DAPI
AlternateTreeBranchSupport.tar.gz 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Gzip Archive - 30,9 KB - MD5: 89a7f35ee5454af2dc1b0b42e4f8151a 14 alternate tree topology branc support
Attributed_80_10-73last.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 43,6 KB - MD5: 46e34f3ddce1aa5eef9e5ad0aa369938 png file with Pisang Madu contig assembly haplotype painting of the 73 largest contigs after the 74 largest
Attributed_80_10-74first.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 223,4 KB - MD5: f96473b398c191ff7216ffb178727140 png file with Pisang Madu contig assembly haplotype painting of the 74 largest contigs
Banksii.3.0_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 51,0 KB - MD5: f946f77f771895e13ee7d234142034ff png file obtained from chromosome ancestry painting of M.a. ssp banksii
Banksii.3.0_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 230,8 KB - MD5: e6c5899365b03e02c27ae94e34015a78 Tabuled file with M.a. ssp banksii assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)
Banksii.3.0.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 470,1 MB - MD5: 8ba8625f34fe14bf75d091c6397ef7f3 M.a. ssp banksii assembly in multifasta file
BanksiiAncestryPaintingFilesOnDYN.tar.gz 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Gzip Archive - 46,4 KB - MD5: 26af7b5ca6a5dba6253a80999cb2e414 Archive of tabulated files counting the number of tags generated according to ancestral alleles identified from Martin et al., 2023 located along the M. a. ssp banksii assembly.
BanksiiAncestryPaintingFilesOnKmer.tar.gz 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Gzip Archive - 168,2 KB - MD5: 697263c443e04ff2533ab0ad34469dea Archive of tabulated files counting the number of tags generated according to ancestral origin based on repeated kmer located along the M. a. ssp banksii assembly
BanksiiAncestryPaintingFilesOnPool.tar.gz 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Gzip Archive - 168,8 KB - MD5: 592eda7e35f83461d41fe29af71232c4 Archive of tabulated files counting the number of pooled ancestral tags (kmer and Martin et al., 2023) located along the M. a. ssp banksii assembly.

3-Cav_dapi (3-8).tif

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

TIFF Image - 5,3 MB -

Original tif image of Grande Naine accession (Cavendish) chromosomes stained with DAPI

AlternateTreeBranchSupport.tar.gz

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Gzip Archive - 30,9 KB -

14 alternate tree topology branc support

Attributed_80_10-73last.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 43,6 KB -

png file with Pisang Madu contig assembly haplotype painting of the 73 largest contigs after the 74 largest

Attributed_80_10-74first.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 223,4 KB -

png file with Pisang Madu contig assembly haplotype painting of the 74 largest contigs

Banksii.3.0_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 51,0 KB -

png file obtained from chromosome ancestry painting of M.a. ssp banksii

Banksii.3.0_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 230,8 KB -

Tabuled file with M.a. ssp banksii assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

Banksii.3.0.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 470,1 MB -

M.a. ssp banksii assembly in multifasta file

BanksiiAncestryPaintingFilesOnDYN.tar.gz

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Gzip Archive - 46,4 KB -

Archive of tabulated files counting the number of tags generated according to ancestral alleles identified from Martin et al., 2023 located along the M. a. ssp banksii assembly.

BanksiiAncestryPaintingFilesOnKmer.tar.gz

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Gzip Archive - 168,2 KB -

Archive of tabulated files counting the number of tags generated according to ancestral origin based on repeated kmer located along the M. a. ssp banksii assembly

BanksiiAncestryPaintingFilesOnPool.tar.gz

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Gzip Archive - 168,8 KB -

Archive of tabulated files counting the number of pooled ancestral tags (kmer and Martin et al., 2023) located along the M. a. ssp banksii assembly.

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