Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.
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141 to 150 of 439 Results
EDTA_repeats_db.fasta
12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.
Unknown - 45,1 MB - MD5: d13adae1b118430ed123210359566edf
EDTA Musa repeats multifasta database
GBSS1_mafftaligned.fas
12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.
Unknown - 13,3 KB - MD5: ab0dff54b3ab36d9d50079185b48566e
GBSS gene alignment in multifasta
LTR_db.fasta
12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.
Unknown - 45,2 MB - MD5: 35108f72814b7a4c0f5eabd0f3e15c89
LTR Musa repeats multifasta database
Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
8 nov. 2024
Rio, Simon; Toniutti, Lucile; Salmon, Frédéric; Hervouet, Catherine; Cardi, Céline; Mournet, Pierre; Guiougou, Chantal; Marius, Franck; Mina, Claude; Delos, Jean-Marie; Lambert, Frédéric; Madec, Camille; Efile, Jean-Claude; Cruaud, Corinne; Aury, Jean-Marc; D'Hont Angélique; Hoarau, Jean-Yves; Martin, Guillaume, 2024, "Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers", https://doi.org/10.18167/DVN1/FTM7GC, CIRAD Dataverse, V1
Data include: (i) variant call format (VCF) for 1129 triploid banana hybrids from biparental crosses implying 38 M. acuminata accessions genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing, (ii) a table (TSV) presenting best linear u...
Genotyping_1129hybrids_200Ksnps.vcf.gz
8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
Gzip Archive - 759,2 MB - MD5: 846dfdb752f869fae1bf874e7e65dca4
Variant Call Format (VCF) for 1129 triploid banana hybrids genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing
GWAS_summary_stats_Kc_model.tar.gz
8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
Gzip Archive - 897,4 MB - MD5: ff576752f521995903dc6cbc31d9483c
Archive (TAR.GZ) of genome-wide association study summary statistics obtained from the Kc model for 24 agro-morphological traits: pseudostem height, pseudostem girth, robustness index, number of leaves at flowering, number of leaves at harvesting, leaf blade length, leaf blade wi...
GWAS_summary_stats_K_model.tar.gz
8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
Gzip Archive - 897,4 MB - MD5: a98183f275761145bcfdf24a19ec79b5
Archive (TAR.GZ) of genome-wide association study summary statistics obtained from the standard K model for 24 agro-morphological traits: pseudostem height, pseudostem girth, robustness index, number of leaves at flowering, number of leaves at harvesting, leaf blade length, leaf...
Phenotyping_2727hybrids_24traits.tsv
8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
Tab-Separated Values - 1,3 MB - MD5: 560e948cdcee4b8150247a6e832f5bcd
Table (TSV) presenting best linear unbiased prediction of genotypic effects for 24 agro-morphological traits along with pedigree information for 2727 triploid banana hybrids, including four checks and 1464 hybrids which were genotyped-by-sequencing. Among the 1464 hybrids genotyp...
README.md
8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
Markdown Text - 5,4 KB - MD5: ccb11091c22ba7bb7bd58d1c435d1168
Read-me
Genomics of white and black fonio millets : passport data, snp and kmer files.
4 nov. 2024
Kaczmarek, Thomas; Cubry, Philippe; Champion, Louis; Causse, Sandrine; Couderc, Sandrine; Orjuela, Julie; Uyoh, Edak A.; Oselebe, Happiness O.; Dachi, Stephen N.; Adje, Charlotte; Sekloka, Emmanuel; Achigan-Dako, Enoch G.; Ibrahim Bio Yerima, Abdou R.; Saidou, Sani; Bakasso, Yacoubou; Diop, Baye M.; Gueye, Mame C.; Agyare, Richard Y.; Adjebeng-Danquah, Joseph; Gueye, Mathieu; Wieringa, Jan J.; Vigouroux, Yves; Billot, Claire; Barnaud, Adeline; Leclerc, Christian, 2024, "Genomics of white and black fonio millets : passport data, snp and kmer files.", https://doi.org/10.18167/DVN1/OYTQO6, CIRAD Dataverse, V1, UNF:6:Id37Yd1Os2wQVns323wx4g== [fileUNF]
Crop evolutionary history and domestication processes are key issues for better conservation and effective use of crop genetic diversity. In Western Africa, two small indigenous grain cereals are found, black and white fonio (Digitaria exilis and Digitaria iburua respectively). T...
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