UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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131 to 140 of 374 Results

Data_Genotype_Phenotype_Gomis_et_al_2024.csv 19 déc. 2024 - Genotyping and phenotyping data of 250 individuals of the Fleur11 x IpaCor AB-QTL population phenotyped during three consecutive years (2020, 2021 and 2022) at Nioro research Station, Senegal Comma Separated Values - 1,2 MB - MD5: 434359b615123a3c26558bbaa4564d2d
readme.txt 19 déc. 2024 - Genotyping and phenotyping data of 250 individuals of the Fleur11 x IpaCor AB-QTL population phenotyped during three consecutive years (2020, 2021 and 2022) at Nioro research Station, Senegal Plain Text - 2,7 KB - MD5: 3b1b325be63b52220e3a3a06e4096d7f
ADH3_mafftaligned.fas 12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 10,9 KB - MD5: 025f2e20c1c6af8c4939e74470547e17 ADH gene alignment in multifasta
EDTA_repeats_db.fasta 12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 45,1 MB - MD5: d13adae1b118430ed123210359566edf EDTA Musa repeats multifasta database
GBSS1_mafftaligned.fas 12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 13,3 KB - MD5: ab0dff54b3ab36d9d50079185b48566e GBSS gene alignment in multifasta
LTR_db.fasta 12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 45,2 MB - MD5: 35108f72814b7a4c0f5eabd0f3e15c89 LTR Musa repeats multifasta database
Genotyping_1129hybrids_200Ksnps.vcf.gz 8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers Gzip Archive - 759,2 MB - MD5: 846dfdb752f869fae1bf874e7e65dca4 Variant Call Format (VCF) for 1129 triploid banana hybrids genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing
GWAS_summary_stats_Kc_model.tar.gz 8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers Gzip Archive - 897,4 MB - MD5: ff576752f521995903dc6cbc31d9483c Archive (TAR.GZ) of genome-wide association study summary statistics obtained from the Kc model for 24 agro-morphological traits: pseudostem height, pseudostem girth, robustness index, number of leaves at flowering, number of leaves at harvesting, leaf blade length, leaf blade wi...
GWAS_summary_stats_K_model.tar.gz 8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers Gzip Archive - 897,4 MB - MD5: a98183f275761145bcfdf24a19ec79b5 Archive (TAR.GZ) of genome-wide association study summary statistics obtained from the standard K model for 24 agro-morphological traits: pseudostem height, pseudostem girth, robustness index, number of leaves at flowering, number of leaves at harvesting, leaf blade length, leaf...
Phenotyping_2727hybrids_24traits.tsv 8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers Tab-Separated Values - 1,3 MB - MD5: 560e948cdcee4b8150247a6e832f5bcd Table (TSV) presenting best linear unbiased prediction of genotypic effects for 24 agro-morphological traits along with pedigree information for 2727 triploid banana hybrids, including four checks and 1464 hybrids which were genotyped-by-sequencing. Among the 1464 hybrids genotyp...

Data_Genotype_Phenotype_Gomis_et_al_2024.csv

19 déc. 2024 - Genotyping and phenotyping data of 250 individuals of the Fleur11 x IpaCor AB-QTL population phenotyped during three consecutive years (2020, 2021 and 2022) at Nioro research Station, Senegal

Comma Separated Values - 1,2 MB -

readme.txt

Plain Text - 2,7 KB -

ADH3_mafftaligned.fas

12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 10,9 KB -

ADH gene alignment in multifasta

EDTA_repeats_db.fasta

12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 45,1 MB -

EDTA Musa repeats multifasta database

GBSS1_mafftaligned.fas

12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 13,3 KB -

GBSS gene alignment in multifasta

LTR_db.fasta

12 nov. 2024 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 45,2 MB -

LTR Musa repeats multifasta database

Genotyping_1129hybrids_200Ksnps.vcf.gz

8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers

Gzip Archive - 759,2 MB -

Variant Call Format (VCF) for 1129 triploid banana hybrids genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing

GWAS_summary_stats_Kc_model.tar.gz

Gzip Archive - 897,4 MB -

Archive (TAR.GZ) of genome-wide association study summary statistics obtained from the Kc model for 24 agro-morphological traits: pseudostem height, pseudostem girth, robustness index, number of leaves at flowering, number of leaves at harvesting, leaf blade length, leaf blade wi...

GWAS_summary_stats_K_model.tar.gz

Gzip Archive - 897,4 MB -

Archive (TAR.GZ) of genome-wide association study summary statistics obtained from the standard K model for 24 agro-morphological traits: pseudostem height, pseudostem girth, robustness index, number of leaves at flowering, number of leaves at harvesting, leaf blade length, leaf...

Phenotyping_2727hybrids_24traits.tsv

Tab-Separated Values - 1,3 MB -

Table (TSV) presenting best linear unbiased prediction of genotypic effects for 24 agro-morphological traits along with pedigree information for 2727 triploid banana hybrids, including four checks and 1464 hybrids which were genotyped-by-sequencing. Among the 1464 hybrids genotyp...

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