UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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121 to 130 of 439 Results

Musa_textilis_abaca.assembly.fna 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 594,4 MB - MD5: 7246a2d1c98111210f54f1e243cee9e9 M. textilis assembly from Zhou et al., 2023
PisangMaduH2AncestryPaintingFilesOnPool.tar.gz 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Gzip Archive - 216,8 KB - MD5: 424a7f39241c5c8b9f1d010972d17913 Archive of tabulated files counting the number of pooled ancestral tags (kmer and Martin et al., 2023) located along the Pisang Madu H2 assembly
rDNA_and_REPEATS.fas 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 550,2 KB - MD5: b5466f234e3e0d7c80fbfe749a027124 multifasta file of Repeats which density is analysed using blast along assemblies
ReadMe.txt 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Plain Text - 11,7 KB - MD5: cdfe416c50c285556cad99861723e11c List of file in dataverse
Repeat.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 934,2 KB - MD5: 916d4044e038848cc76b5983b831dfd9 Configuration file for Repeat density layesr in circos representation
Textilis.1.0_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 32,0 KB - MD5: b83f85f154c37c1b6cc70479646e0a72 png file obtained from chromosome ancestry painting of M. textilis
Textilis.1.0_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 276,6 KB - MD5: eb75832c23ef29527025711f9198168c Tabulated file with M. textilis assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)
Textilis.1.0.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 529,0 MB - MD5: 8f42ffb0ad7f4e77ed22581660108781 M. textilis assembly in multifasta file
Textilis.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 57,5 MB - MD5: a5d397d2c27218fe1cc99d356a122a86 M. textilis annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron 7 janv. 2025 Cros, David; Le Squin, Sandrine, 2025, "SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron", https://doi.org/10.18167/DVN1/7ZC8YN, CIRAD Dataverse, V1, UNF:6:r99Es7nJFUQ9h6wXBV5+pg== [fileUNF] The data come from two experimental designs located on the SOCFINDO estate in North Sumatra, Indonesia. One is used to train genomic prediction models, the other as test set. The SNP genotypes were obtained with a custom Affymetrix Axiom® SNP array. The phenotypes are fresh fruit...

Musa_textilis_abaca.assembly.fna

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 594,4 MB -

M. textilis assembly from Zhou et al., 2023

PisangMaduH2AncestryPaintingFilesOnPool.tar.gz

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Gzip Archive - 216,8 KB -

Archive of tabulated files counting the number of pooled ancestral tags (kmer and Martin et al., 2023) located along the Pisang Madu H2 assembly

rDNA_and_REPEATS.fas

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 550,2 KB -

multifasta file of Repeats which density is analysed using blast along assemblies

ReadMe.txt

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Plain Text - 11,7 KB -

List of file in dataverse

Repeat.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 934,2 KB -

Configuration file for Repeat density layesr in circos representation

Textilis.1.0_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 32,0 KB -

png file obtained from chromosome ancestry painting of M. textilis

Textilis.1.0_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 276,6 KB -

Tabulated file with M. textilis assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

Textilis.1.0.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 529,0 MB -

M. textilis assembly in multifasta file

Textilis.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 57,5 MB -

M. textilis annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron

7 janv. 2025

Cros, David; Le Squin, Sandrine, 2025, "SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron", https://doi.org/10.18167/DVN1/7ZC8YN, CIRAD Dataverse, V1, UNF:6:r99Es7nJFUQ9h6wXBV5+pg== [fileUNF]

The data come from two experimental designs located on the SOCFINDO estate in North Sumatra, Indonesia. One is used to train genomic prediction models, the other as test set. The SNP genotypes were obtained with a custom Affymetrix Axiom® SNP array. The phenotypes are fresh fruit...

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