UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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121 to 130 of 368 Results

Textilis.1.0_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 32,0 KB - MD5: b83f85f154c37c1b6cc70479646e0a72 png file obtained from chromosome ancestry painting of M. textilis
Textilis.1.0_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 276,6 KB - MD5: eb75832c23ef29527025711f9198168c Tabulated file with M. textilis assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)
Textilis.1.0.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 529,0 MB - MD5: 8f42ffb0ad7f4e77ed22581660108781 M. textilis assembly in multifasta file
Textilis.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 57,5 MB - MD5: a5d397d2c27218fe1cc99d356a122a86 M. textilis annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
MLP.py 7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron Python Source Code - 12,1 KB - MD5: 0e439c33b654a3a8bc26aa938cd5a870 python script that implements genomic prediction with the multi-layer perceptron artificial neural network
README.txt 7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron Plain Text - 903 B - MD5: 15a5ab43acaea68f965959c6d1f1a4f8 Files description
Xtr_PROD_SingleRecords.txt 7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron Plain Text - 34,1 MB - MD5: 10e67c4092c84a0395ef6bc1881e03db SNP genotypes of the training set
Xval_PROD_SingleRecords.txt 7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron Plain Text - 27,8 MB - MD5: 2c048e8dbd36d7676670b10b3d7160c7 SNP genotypes of the test set
Ytr_PROD_SingleRecords_normalized.tab 7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron Tabular Data - 25,3 KB - 1 Variables, 688 Observations - UNF:6:pBLqToykjsSCy6YlRkqVFg== normalized phenotypes of the training set
Yval_PROD_SingleRecords_normalized.tab 7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron Tabular Data - 18,1 KB - 1 Variables, 492 Observations - UNF:6:hi9zasl6s227fU6F97Buhg== normalized phenotypes of the test set

Textilis.1.0_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 32,0 KB -

png file obtained from chromosome ancestry painting of M. textilis

Textilis.1.0_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 276,6 KB -

Tabulated file with M. textilis assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

Textilis.1.0.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 529,0 MB -

M. textilis assembly in multifasta file

Textilis.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 57,5 MB -

M. textilis annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

MLP.py

7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron

Python Source Code - 12,1 KB -

python script that implements genomic prediction with the multi-layer perceptron artificial neural network

README.txt

7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron

Plain Text - 903 B -

Files description

Xtr_PROD_SingleRecords.txt

7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron

Plain Text - 34,1 MB -

SNP genotypes of the training set

Xval_PROD_SingleRecords.txt

7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron

Plain Text - 27,8 MB -

SNP genotypes of the test set

Ytr_PROD_SingleRecords_normalized.tab

7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron

Tabular Data - 25,3 KB - 1 Variables, 688 Observations -

normalized phenotypes of the training set

Yval_PROD_SingleRecords_normalized.tab

7 janv. 2025 - SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron

Tabular Data - 18,1 KB - 1 Variables, 492 Observations -

normalized phenotypes of the test set

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