UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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111 to 120 of 368 Results

MSchizo.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 60,9 MB - MD5: 3e8a6838ec1aab3140628268ae1eb760 M. schizocarpa annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
Musa_balbisiana.1.1_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 31,8 KB - MD5: 0deb72ba2815a91f9e2f533c9346a809 png file obtained from chromosome ancestry painting of M. balbisiana
Musa_balbisiana.1.1_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 202,3 KB - MD5: 9464a1017ecc181ff56faafc16a41738 Tabulated file with M. balbisiana assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)
Musa_balbisiana.1.1.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 443,3 MB - MD5: f2fa75d7a085ab33e448be7289ea7950 M. balbisiana assembly in multifasta file
Musa_balbisiana.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 59,4 MB - MD5: b19551536e92ede6ee2864948e3c1fe9 M. balbisiana annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
Musa_textilis_abaca.assembly.fna 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 594,4 MB - MD5: 7246a2d1c98111210f54f1e243cee9e9 M. textilis assembly from Zhou et al., 2023
PisangMaduH2AncestryPaintingFilesOnPool.tar.gz 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Gzip Archive - 216,8 KB - MD5: 424a7f39241c5c8b9f1d010972d17913 Archive of tabulated files counting the number of pooled ancestral tags (kmer and Martin et al., 2023) located along the Pisang Madu H2 assembly
rDNA_and_REPEATS.fas 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 550,2 KB - MD5: b5466f234e3e0d7c80fbfe749a027124 multifasta file of Repeats which density is analysed using blast along assemblies
ReadMe.txt 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Plain Text - 11,7 KB - MD5: cdfe416c50c285556cad99861723e11c List of file in dataverse
Repeat.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 934,2 KB - MD5: 916d4044e038848cc76b5983b831dfd9 Configuration file for Repeat density layesr in circos representation

MSchizo.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 60,9 MB -

M. schizocarpa annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

Musa_balbisiana.1.1_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 31,8 KB -

png file obtained from chromosome ancestry painting of M. balbisiana

Musa_balbisiana.1.1_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 202,3 KB -

Tabulated file with M. balbisiana assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

Musa_balbisiana.1.1.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 443,3 MB -

M. balbisiana assembly in multifasta file

Musa_balbisiana.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 59,4 MB -

M. balbisiana annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

Musa_textilis_abaca.assembly.fna

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 594,4 MB -

M. textilis assembly from Zhou et al., 2023

PisangMaduH2AncestryPaintingFilesOnPool.tar.gz

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Gzip Archive - 216,8 KB -

Archive of tabulated files counting the number of pooled ancestral tags (kmer and Martin et al., 2023) located along the Pisang Madu H2 assembly

rDNA_and_REPEATS.fas

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 550,2 KB -

multifasta file of Repeats which density is analysed using blast along assemblies

ReadMe.txt

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Plain Text - 11,7 KB -

List of file in dataverse

Repeat.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 934,2 KB -

Configuration file for Repeat density layesr in circos representation

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