UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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91 to 100 of 439 Results

Macmad_h1.1.0.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 513,5 MB - MD5: 55e5730e764272f007881858a0e1f05b Pisang Madu H1 (M.a. ssp halabanensis) assembly in multifasta file
Macmad_h1.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 65,3 MB - MD5: 99c6aca54d074fed7c6c633ed8847af0 Pisang Madu H1 (M.a. ssp halabanensis) annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
Macmad_h2.1.0_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 81,1 KB - MD5: bc52b64cfcb5026fc5d5a3b72130ff9a png file obtained from chromosome ancestry painting of Pisang Madu H2
Macmad_h2.1.0_100000_count.MajR.svg 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. SVG Image - 767,2 KB - MD5: 2a771c2055a8a938c51bf874e138bd78 svg file obtained from chromosome ancestry painting of Pisang Madu H2
Macmad_h2.1.0_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 201,3 KB - MD5: 1b083aab39771437512c155ef900b554 Tabulated file with Pisan Madu h2 assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)
Macmad_h2.1.0.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 528,0 MB - MD5: d00b320ea4d73f6327539df51476d0e3 Pisang Madu H2 (M.a. ssp halabanensis) annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
Macmad_h2.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 65,7 MB - MD5: be00ccbe76da31f314a2a9cb38627f7d Pisang Madu H2 annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
MaduH1MaduH1_dotRatio.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 5,3 MB - MD5: 198102b95ae5a521bc6e229b97c49c83 png file generated to do Supp.Fig.42 that allowed to parse each read pools to one of Pisang Madu haplotype
MaduH2MaduH2_dotRatio.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 5,3 MB - MD5: 0c71bf317248ec8477a297b89d35b7d5 png file generated to do Supp.Fig.42 that allowed to parse each read pools to one of Pisang Madu haplotype
MAH1_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 59,0 KB - MD5: 69cd6f06865edc0b5b705cbdf9e0065c png file obtained from chromosome ancestry painting of M.a. ssp malaccensis h1

Macmad_h1.1.0.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 513,5 MB -

Pisang Madu H1 (M.a. ssp halabanensis) assembly in multifasta file

Macmad_h1.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 65,3 MB -

Pisang Madu H1 (M.a. ssp halabanensis) annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

Macmad_h2.1.0_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 81,1 KB -

png file obtained from chromosome ancestry painting of Pisang Madu H2

Macmad_h2.1.0_100000_count.MajR.svg

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

SVG Image - 767,2 KB -

svg file obtained from chromosome ancestry painting of Pisang Madu H2

Macmad_h2.1.0_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 201,3 KB -

Tabulated file with Pisan Madu h2 assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

Macmad_h2.1.0.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 528,0 MB -

Pisang Madu H2 (M.a. ssp halabanensis) annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

Macmad_h2.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 65,7 MB -

Pisang Madu H2 annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

MaduH1MaduH1_dotRatio.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 5,3 MB -

png file generated to do Supp.Fig.42 that allowed to parse each read pools to one of Pisang Madu haplotype

MaduH2MaduH2_dotRatio.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 5,3 MB -

png file generated to do Supp.Fig.42 that allowed to parse each read pools to one of Pisang Madu haplotype

MAH1_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 59,0 KB -

png file obtained from chromosome ancestry painting of M.a. ssp malaccensis h1

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