UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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91 to 100 of 374 Results

Macmad_h2.1.0.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 528,0 MB - MD5: d00b320ea4d73f6327539df51476d0e3 Pisang Madu H2 (M.a. ssp halabanensis) annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
Macmad_h2.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 65,7 MB - MD5: be00ccbe76da31f314a2a9cb38627f7d Pisang Madu H2 annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
MaduH1MaduH1_dotRatio.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 5,3 MB - MD5: 198102b95ae5a521bc6e229b97c49c83 png file generated to do Supp.Fig.42 that allowed to parse each read pools to one of Pisang Madu haplotype
MaduH2MaduH2_dotRatio.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 5,3 MB - MD5: 0c71bf317248ec8477a297b89d35b7d5 png file generated to do Supp.Fig.42 that allowed to parse each read pools to one of Pisang Madu haplotype
MAH1_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 59,0 KB - MD5: 69cd6f06865edc0b5b705cbdf9e0065c png file obtained from chromosome ancestry painting of M.a. ssp malaccensis h1
MAH1_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 202,9 KB - MD5: c0309c2da9035007ca7f4b36f51552ee Tabulated file with M.a. ssp malaccensis h1 assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)
MAH1.fasta 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 453,7 MB - MD5: 8cc71ac5f619fb2580c7ebb7ec14284c M.a. ssp malaccensis h1 assembly in multifasta file
MAH1.gff3 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Unknown - 61,4 MB - MD5: 281c81257d647a827fdcf3ab7519bfc9 M.a. ssp malaccensis h1 annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification
MAH2_100000_count.MajR.png 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. PNG Image - 59,4 KB - MD5: f2d6783f830ad3cd2917c894cd90d915 png file obtained from chromosome ancestry painting of M.a. ssp malaccensis h2
MAH2_100000_count.MajR.tab 13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. Tab-Separated Values - 201,5 KB - MD5: f2d1679ab347e6049414e890e0e55edb Tabulated file with M.a. ssp malaccensis h2 assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

Macmad_h2.1.0.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 528,0 MB -

Pisang Madu H2 (M.a. ssp halabanensis) annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

Macmad_h2.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 65,7 MB -

Pisang Madu H2 annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

MaduH1MaduH1_dotRatio.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 5,3 MB -

png file generated to do Supp.Fig.42 that allowed to parse each read pools to one of Pisang Madu haplotype

MaduH2MaduH2_dotRatio.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 5,3 MB -

png file generated to do Supp.Fig.42 that allowed to parse each read pools to one of Pisang Madu haplotype

MAH1_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 59,0 KB -

png file obtained from chromosome ancestry painting of M.a. ssp malaccensis h1

MAH1_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 202,9 KB -

Tabulated file with M.a. ssp malaccensis h1 assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

MAH1.fasta

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 453,7 MB -

M.a. ssp malaccensis h1 assembly in multifasta file

MAH1.gff3

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Unknown - 61,4 MB -

M.a. ssp malaccensis h1 annotation with liftoff v1.6.3 and used with jcvi v1.1.18 for orthologs gene and block identification

MAH2_100000_count.MajR.png

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

PNG Image - 59,4 KB -

png file obtained from chromosome ancestry painting of M.a. ssp malaccensis h2

MAH2_100000_count.MajR.tab

13 janv. 2025 - Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

Tab-Separated Values - 201,5 KB -

Tabulated file with M.a. ssp malaccensis h2 assembly origin painting to construct chromosome scale figures (6 columns: Name, Chr, start, end, origin, color)

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