UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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1 to 10 of 439 Results

Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera 16 sept. 2025 Garsmeur, Olivier; Rio, Simon; D'Hont, Angélique, 2025, "Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera", https://doi.org/10.18167/DVN1/YOH50G, CIRAD Dataverse, V1, UNF:6:LLZV2GI4UQ87T4KcmngxlQ== [fileUNF] Data include: (i) description table (TAB) listing accessions and their associated data (ii) chloroplast genome assemblies (FASTA) of 384 accessions (iii) variant call format (VCF) for 390 accessions genotyped for 18,074,258 bi-allelic single nucleotide polymorphisms (iv) k-mer co...
Accession.tab 16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera Tabular Data - 36,8 KB - 8 Variables, 390 Observations - UNF:6:LLZV2GI4UQ87T4KcmngxlQ== List of accessions and their associated data
Chloroplast_assemblies_384_accessions.tar 16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera TAR Archive - 14,5 MB - MD5: fcdf00cc5d652ccb73a0ec7fe54a3429 Chloroplast assemblies of 384 accessions
README.md 16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera Markdown Text - 3,4 KB - MD5: b37787dea0dfc6063beb2b5731031537
Kmer_database_390_accessions_27015331_kmers_00000001_10000000.tab.gz 16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera Gzip Archive - 1,7 GB - MD5: a8a42303ea341d6ab8496c8765447850 K-mers 1 to 10,000,000 of the k-mer database
Kmer_database_390_accessions_27015331_kmers_10000001_20000000.tab.gz 16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera Gzip Archive - 1,7 GB - MD5: 709108140a6a2265d6ea23a5c113453d K-mers 10,000,001 to 20,000,000 of the k-mer database
Kmer_database_390_accessions_27015331_kmers_20000001_27015331.tab.gz 16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera Gzip Archive - 1,2 GB - MD5: 22c42c6cf2ffdf39ee20a9b192a97c7d K-mers 20,000,001 to 27,015,331 of the k-mer database
Genotyping_390_accessions_18074258_SNPs_Chr10A.vcf.gz 16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera Gzip Archive - 976,7 MB - MD5: a9fd86a03db7f510a733a4543295aa56 VCF for chromosome Chr10A
Genotyping_390_accessions_18074258_SNPs_Chr1A.vcf.gz 16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera Gzip Archive - 3,6 GB - MD5: 2d4da35b37ad65b5d901fd9b5ff29f8f VCF for chromosome Chr1A
Genotyping_390_accessions_18074258_SNPs_Chr2A.vcf.gz 16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera Gzip Archive - 2,8 GB - MD5: 194625b2cc317b168d33363a311347cd VCF for chromosome Chr2A

Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera

16 sept. 2025

Garsmeur, Olivier; Rio, Simon; D'Hont, Angélique, 2025, "Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera", https://doi.org/10.18167/DVN1/YOH50G, CIRAD Dataverse, V1, UNF:6:LLZV2GI4UQ87T4KcmngxlQ== [fileUNF]

Data include: (i) description table (TAB) listing accessions and their associated data (ii) chloroplast genome assemblies (FASTA) of 384 accessions (iii) variant call format (VCF) for 390 accessions genotyped for 18,074,258 bi-allelic single nucleotide polymorphisms (iv) k-mer co...

Accession.tab

16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera

Tabular Data - 36,8 KB - 8 Variables, 390 Observations -

List of accessions and their associated data

Chloroplast_assemblies_384_accessions.tar

16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera

TAR Archive - 14,5 MB -

Chloroplast assemblies of 384 accessions

README.md

16 sept. 2025 - Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera

Markdown Text - 3,4 KB -

Kmer_database_390_accessions_27015331_kmers_00000001_10000000.tab.gz