1 to 10 of 71 Results
16 sept. 2025
Garsmeur, Olivier; Rio, Simon; D'Hont, Angélique, 2025, "Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera", https://doi.org/10.18167/DVN1/YOH50G, CIRAD Dataverse, V1, UNF:6:LLZV2GI4UQ87T4KcmngxlQ== [fileUNF]
Data include: (i) description table (TAB) listing accessions and their associated data (ii) chloroplast genome assemblies (FASTA) of 384 accessions (iii) variant call format (VCF) for 390 accessions genotyped for 18,074,258 bi-allelic single nucleotide polymorphisms (iv) k-mer co... |
9 sept. 2025
Gilabert, Aude; Deu, Monique; Champion, Louis; Cubry, Philippe; Donkpegan, Armel; Rami, Jean-François; Pot, David; Vigouroux, Yves; Leclerc, Christian, 2025, "Population genomics of African cultivated sorghum: vcf file and passeport and archaeological data", https://doi.org/10.18167/DVN1/SAAMUT, CIRAD Dataverse, V2
This dataset is accompanying the manuscript "Integrating ethnolinguistic and archaeobotanical data to uncover the origin and dispersal of cultivated sorghum in Africa: a genomic perspective", available on bioRxiv under the accession 2025.04.16.648676 and is under consideration fo... |
16 mai 2025
Toniutti, Lucile, 2025, "Phenotypic data for 2727 triploid banana hybrids evaluated for 23 agro-morphological traits in Guadeloupe (2012-2017) and genoyping information for their 36 progenitors", https://doi.org/10.18167/DVN1/YSM8R7, CIRAD Dataverse, V1, UNF:6:sgEPzcbR6kQpBH8DBvJedg== [fileUNF]
Data include: variant call format (VCF) for 36 parents of 2723 triploid banana hybrids genotyped for 125245 bi-allelic single nucleotide polymorphisms obtained using whole sequencing information raw phenotypic data for the 23 agro-morphological traits, along with pedigree informa... |
15 mai 2025
Causse, Sandrine, 2025, "Seed morphometrics of white and black fonio seeds: passport data and morphometrics data", https://doi.org/10.18167/DVN1/ZFZTWP, CIRAD Dataverse, V1, UNF:6:W0UA+sH4BpY5UPxN8G0tCg== [fileUNF]
Plant genetic resources characterization is essential for their conservation and their use in both breeding strategies and adaptation to global change. In Western Africa, two small indigenous grain cereals are found, black and white fonio (Digitaria exilis and Digitaria iburua re... |
Baurens, Franc-Christophe; Martin, Guillaume, 2024, "Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.", https://doi.org/10.18167/DVN1/6TLMD3, CIRAD Dataverse, V2
Source data associated with the paper "Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors" (includes sequence data and data and configuration files for figures and artworks generation). multiple types of data are present : raw Ima... |
7 janv. 2025
Cros, David; Le Squin, Sandrine, 2025, "SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron", https://doi.org/10.18167/DVN1/7ZC8YN, CIRAD Dataverse, V1, UNF:6:r99Es7nJFUQ9h6wXBV5+pg== [fileUNF]
The data come from two experimental designs located on the SOCFINDO estate in North Sumatra, Indonesia. One is used to train genomic prediction models, the other as test set. The SNP genotypes were obtained with a custom Affymetrix Axiom® SNP array. The phenotypes are fresh fruit... |
19 déc. 2024
Fonceka, Daniel, 2024, "Genotyping and phenotyping data of 250 individuals of the Fleur11 x IpaCor AB-QTL population phenotyped during three consecutive years (2020, 2021 and 2022) at Nioro research Station, Senegal", https://doi.org/10.18167/DVN1/8LYUWO, CIRAD Dataverse, V1
This dataset relates to the paper "Mapping QTLs for early leafspot resistance and yield component traits using an interspecific AB-QTL population in peanut" published in 2024 in Frontiers in Plant Science. It gathers three years of phenotyping data collected during the rainy seas... |
8 nov. 2024
Rio, Simon; Toniutti, Lucile; Salmon, Frédéric; Hervouet, Catherine; Cardi, Céline; Mournet, Pierre; Guiougou, Chantal; Marius, Franck; Mina, Claude; Delos, Jean-Marie; Lambert, Frédéric; Madec, Camille; Efile, Jean-Claude; Cruaud, Corinne; Aury, Jean-Marc; D'Hont Angélique; Hoarau, Jean-Yves; Martin, Guillaume, 2024, "Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers", https://doi.org/10.18167/DVN1/FTM7GC, CIRAD Dataverse, V1
Data include: (i) variant call format (VCF) for 1129 triploid banana hybrids from biparental crosses implying 38 M. acuminata accessions genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing, (ii) a table (TSV) presenting best linear u... |
4 nov. 2024
Kaczmarek, Thomas; Cubry, Philippe; Champion, Louis; Causse, Sandrine; Couderc, Sandrine; Orjuela, Julie; Uyoh, Edak A.; Oselebe, Happiness O.; Dachi, Stephen N.; Adje, Charlotte; Sekloka, Emmanuel; Achigan-Dako, Enoch G.; Ibrahim Bio Yerima, Abdou R.; Saidou, Sani; Bakasso, Yacoubou; Diop, Baye M.; Gueye, Mame C.; Agyare, Richard Y.; Adjebeng-Danquah, Joseph; Gueye, Mathieu; Wieringa, Jan J.; Vigouroux, Yves; Billot, Claire; Barnaud, Adeline; Leclerc, Christian, 2024, "Genomics of white and black fonio millets : passport data, snp and kmer files.", https://doi.org/10.18167/DVN1/OYTQO6, CIRAD Dataverse, V1, UNF:6:Id37Yd1Os2wQVns323wx4g== [fileUNF]
Crop evolutionary history and domestication processes are key issues for better conservation and effective use of crop genetic diversity. In Western Africa, two small indigenous grain cereals are found, black and white fonio (Digitaria exilis and Digitaria iburua respectively). T... |
5 sept. 2024
Chabannes, Matthieu, 2024, "RNAseq dataset of Cavendish BSOLV infected plant (GWT-19)", https://doi.org/10.18167/DVN1/YTRCBN, CIRAD Dataverse, V1
Deep sequencing of total RNA from Cavendish BSOLV infected banana plant |
