UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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1 to 10 of 67 Results

Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures. 13 janv. 2025 Baurens, Franc-Christophe; Martin, Guillaume, 2024, "Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.", https://doi.org/10.18167/DVN1/6TLMD3, CIRAD Dataverse, V2 Source data associated with the paper "Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors" (includes sequence data and data and configuration files for figures and artworks generation). multiple types of data are present : raw Ima...
SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron 7 janv. 2025 Cros, David; Le Squin, Sandrine, 2025, "SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron", https://doi.org/10.18167/DVN1/7ZC8YN, CIRAD Dataverse, V1, UNF:6:r99Es7nJFUQ9h6wXBV5+pg== [fileUNF] The data come from two experimental designs located on the SOCFINDO estate in North Sumatra, Indonesia. One is used to train genomic prediction models, the other as test set. The SNP genotypes were obtained with a custom Affymetrix Axiom® SNP array. The phenotypes are fresh fruit...
Genotyping and phenotyping data of 250 individuals of the Fleur11 x IpaCor AB-QTL population phenotyped during three consecutive years (2020, 2021 and 2022) at Nioro research Station, Senegal 19 déc. 2024 Fonceka, Daniel, 2024, "Genotyping and phenotyping data of 250 individuals of the Fleur11 x IpaCor AB-QTL population phenotyped during three consecutive years (2020, 2021 and 2022) at Nioro research Station, Senegal", https://doi.org/10.18167/DVN1/8LYUWO, CIRAD Dataverse, V1 This dataset relates to the paper "Mapping QTLs for early leafspot resistance and yield component traits using an interspecific AB-QTL population in peanut" published in 2024 in Frontiers in Plant Science. It gathers three years of phenotyping data collected during the rainy seas...
Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers 8 nov. 2024 Rio, Simon; Toniutti, Lucile; Salmon, Frédéric; Hervouet, Catherine; Cardi, Céline; Mournet, Pierre; Guiougou, Chantal; Marius, Franck; Mina, Claude; Delos, Jean-Marie; Lambert, Frédéric; Madec, Camille; Efile, Jean-Claude; Cruaud, Corinne; Aury, Jean-Marc; D'Hont Angélique; Hoarau, Jean-Yves; Martin, Guillaume, 2024, "Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers", https://doi.org/10.18167/DVN1/FTM7GC, CIRAD Dataverse, V1 Data include: (i) variant call format (VCF) for 1129 triploid banana hybrids from biparental crosses implying 38 M. acuminata accessions genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing, (ii) a table (TSV) presenting best linear u...
Genomics of white and black fonio millets : passport data, snp and kmer files. 4 nov. 2024 Kaczmarek, Thomas; Cubry, Philippe; Champion, Louis; Causse, Sandrine; Couderc, Sandrine; Orjuela, Julie; Uyoh, Edak A.; Oselebe, Happiness O.; Dachi, Stephen N.; Adje, Charlotte; Sekloka, Emmanuel; Achigan-Dako, Enoch G.; Ibrahim Bio Yerima, Abdou R.; Saidou, Sani; Bakasso, Yacoubou; Diop, Baye M.; Gueye, Mame C.; Agyare, Richard Y.; Adjebeng-Danquah, Joseph; Gueye, Mathieu; Wieringa, Jan J.; Vigouroux, Yves; Billot, Claire; Barnaud, Adeline; Leclerc, Christian, 2024, "Genomics of white and black fonio millets : passport data, snp and kmer files.", https://doi.org/10.18167/DVN1/OYTQO6, CIRAD Dataverse, V1, UNF:6:Id37Yd1Os2wQVns323wx4g== [fileUNF] Crop evolutionary history and domestication processes are key issues for better conservation and effective use of crop genetic diversity. In Western Africa, two small indigenous grain cereals are found, black and white fonio (Digitaria exilis and Digitaria iburua respectively). T...
RNAseq dataset of Cavendish BSOLV infected plant (GWT-19) 5 sept. 2024 Chabannes, Matthieu, 2024, "RNAseq dataset of Cavendish BSOLV infected plant (GWT-19)", https://doi.org/10.18167/DVN1/YTRCBN, CIRAD Dataverse, V1 Deep sequencing of total RNA from Cavendish BSOLV infected banana plant
RNAseq dataset of PKW banana plant (GWT-18) 5 sept. 2024 Chabannes, Matthieu, 2024, "RNAseq dataset of PKW banana plant (GWT-18)", https://doi.org/10.18167/DVN1/L4LBY7, CIRAD Dataverse, V1 Deep sequencing of total RNA from Pisang Klutuk Wulung (PKW) banana plant
sRNA dataset of Cavendish AAA non infected plant (BPO-60) 30 août 2024 Chabannes, Matthieu, 2024, "sRNA dataset of Cavendish AAA non infected plant (BPO-60)", https://doi.org/10.18167/DVN1/5LFLWU, CIRAD Dataverse, V1 Deep sequencing of sRNA from AAA non infected cavendish plant (BPO-60)
sRNA dataset of PKWxPKW banana plant (GWT-9) 30 août 2024 Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-9)", https://doi.org/10.18167/DVN1/9IHYTJ, CIRAD Dataverse, V1 Deep sequencing of sRNA from self-pollinated PKW plant. Endogenous banana streak virus (eBSV) genotype for GWT-9 is (OL1 + OL2 ; GF7 + GF9) where OL1 stands for the infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-1) and OL2 for the non-infective allele (eB...
sRNA dataset of PKWxPKW banana plant (GWT-10) 30 août 2024 Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-10)", https://doi.org/10.18167/DVN1/JHKGIO, CIRAD Dataverse, V1 Deep sequencing of sRNA from self-pollinated PKW plant GWT-10 is homozygous for the non-infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-2), the non-infective allele of endogenous Banana streak Goldfinger virus (eBSGFV-9) and the endogenous Banana streak Im...

Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.

13 janv. 2025

Baurens, Franc-Christophe; Martin, Guillaume, 2024, "Source Data to study Genome assemblies of Musa wild banana ancestors and draw figures.", https://doi.org/10.18167/DVN1/6TLMD3, CIRAD Dataverse, V2

Source data associated with the paper "Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors" (includes sequence data and data and configuration files for figures and artworks generation). multiple types of data are present : raw Ima...

SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron

7 janv. 2025

Cros, David; Le Squin, Sandrine, 2025, "SNP data and phenotypes for oil palm training and test sets, and associated script for genomic predictions with multi-layer perceptron", https://doi.org/10.18167/DVN1/7ZC8YN, CIRAD Dataverse, V1, UNF:6:r99Es7nJFUQ9h6wXBV5+pg== [fileUNF]

The data come from two experimental designs located on the SOCFINDO estate in North Sumatra, Indonesia. One is used to train genomic prediction models, the other as test set. The SNP genotypes were obtained with a custom Affymetrix Axiom® SNP array. The phenotypes are fresh fruit...

Genotyping and phenotyping data of 250 individuals of the Fleur11 x IpaCor AB-QTL population phenotyped during three consecutive years (2020, 2021 and 2022) at Nioro research Station, Senegal

19 déc. 2024

Fonceka, Daniel, 2024, "Genotyping and phenotyping data of 250 individuals of the Fleur11 x IpaCor AB-QTL population phenotyped during three consecutive years (2020, 2021 and 2022) at Nioro research Station, Senegal", https://doi.org/10.18167/DVN1/8LYUWO, CIRAD Dataverse, V1

This dataset relates to the paper "Mapping QTLs for early leafspot resistance and yield component traits using an interspecific AB-QTL population in peanut" published in 2024 in Frontiers in Plant Science. It gathers three years of phenotyping data collected during the rainy seas...

Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers

8 nov. 2024

Rio, Simon; Toniutti, Lucile; Salmon, Frédéric; Hervouet, Catherine; Cardi, Céline; Mournet, Pierre; Guiougou, Chantal; Marius, Franck; Mina, Claude; Delos, Jean-Marie; Lambert, Frédéric; Madec, Camille; Efile, Jean-Claude; Cruaud, Corinne; Aury, Jean-Marc; D'Hont Angélique; Hoarau, Jean-Yves; Martin, Guillaume, 2024, "Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers", https://doi.org/10.18167/DVN1/FTM7GC, CIRAD Dataverse, V1

Data include: (i) variant call format (VCF) for 1129 triploid banana hybrids from biparental crosses implying 38 M. acuminata accessions genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing, (ii) a table (TSV) presenting best linear u...

Genomics of white and black fonio millets : passport data, snp and kmer files.

4 nov. 2024

Kaczmarek, Thomas; Cubry, Philippe; Champion, Louis; Causse, Sandrine; Couderc, Sandrine; Orjuela, Julie; Uyoh, Edak A.; Oselebe, Happiness O.; Dachi, Stephen N.; Adje, Charlotte; Sekloka, Emmanuel; Achigan-Dako, Enoch G.; Ibrahim Bio Yerima, Abdou R.; Saidou, Sani; Bakasso, Yacoubou; Diop, Baye M.; Gueye, Mame C.; Agyare, Richard Y.; Adjebeng-Danquah, Joseph; Gueye, Mathieu; Wieringa, Jan J.; Vigouroux, Yves; Billot, Claire; Barnaud, Adeline; Leclerc, Christian, 2024, "Genomics of white and black fonio millets : passport data, snp and kmer files.", https://doi.org/10.18167/DVN1/OYTQO6, CIRAD Dataverse, V1, UNF:6:Id37Yd1Os2wQVns323wx4g== [fileUNF]

Crop evolutionary history and domestication processes are key issues for better conservation and effective use of crop genetic diversity. In Western Africa, two small indigenous grain cereals are found, black and white fonio (Digitaria exilis and Digitaria iburua respectively). T...

RNAseq dataset of Cavendish BSOLV infected plant (GWT-19)

5 sept. 2024

Chabannes, Matthieu, 2024, "RNAseq dataset of Cavendish BSOLV infected plant (GWT-19)", https://doi.org/10.18167/DVN1/YTRCBN, CIRAD Dataverse, V1

Deep sequencing of total RNA from Cavendish BSOLV infected banana plant

RNAseq dataset of PKW banana plant (GWT-18)

5 sept. 2024

Chabannes, Matthieu, 2024, "RNAseq dataset of PKW banana plant (GWT-18)", https://doi.org/10.18167/DVN1/L4LBY7, CIRAD Dataverse, V1

Deep sequencing of total RNA from Pisang Klutuk Wulung (PKW) banana plant

sRNA dataset of Cavendish AAA non infected plant (BPO-60)

30 août 2024

Chabannes, Matthieu, 2024, "sRNA dataset of Cavendish AAA non infected plant (BPO-60)", https://doi.org/10.18167/DVN1/5LFLWU, CIRAD Dataverse, V1

Deep sequencing of sRNA from AAA non infected cavendish plant (BPO-60)

sRNA dataset of PKWxPKW banana plant (GWT-9)

30 août 2024

Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-9)", https://doi.org/10.18167/DVN1/9IHYTJ, CIRAD Dataverse, V1

Deep sequencing of sRNA from self-pollinated PKW plant. Endogenous banana streak virus (eBSV) genotype for GWT-9 is (OL1 + OL2 ; GF7 + GF9) where OL1 stands for the infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-1) and OL2 for the non-infective allele (eB...

sRNA dataset of PKWxPKW banana plant (GWT-10)

30 août 2024

Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-10)", https://doi.org/10.18167/DVN1/JHKGIO, CIRAD Dataverse, V1

Deep sequencing of sRNA from self-pollinated PKW plant GWT-10 is homozygous for the non-infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-2), the non-infective allele of endogenous Banana streak Goldfinger virus (eBSGFV-9) and the endogenous Banana streak Im...

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