Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.
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1 to 10 of 302 Results
Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors
12 nov. 2024
Baurens, Franc-Christophe; Martin, Guillaume, 2024, "Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors", https://doi.org/10.18167/DVN1/6TLMD3, CIRAD Dataverse, V1
Sequence data associated with the paper "Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors" . Two types of data are present : Multifasta alignment of two genes that allows plylogenetic analysis of unknown banana cultivar contribu...
ADH3_mafftaligned.fas
12 nov. 2024 - Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors
Unknown - 10,9 KB - MD5: 025f2e20c1c6af8c4939e74470547e17
EDTA_repeats_db.fasta
12 nov. 2024 - Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors
Unknown - 45,1 MB - MD5: d13adae1b118430ed123210359566edf
GBSS1_mafftaligned.fas
12 nov. 2024 - Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors
Unknown - 13,3 KB - MD5: ab0dff54b3ab36d9d50079185b48566e
LTR_db.fasta
12 nov. 2024 - Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors
Unknown - 45,2 MB - MD5: 35108f72814b7a4c0f5eabd0f3e15c89
Readme.txt
12 nov. 2024 - Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors
Plain Text - 534 B - MD5: 8546f867411e14a5ee7ed829127be946
Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
8 nov. 2024
Rio, Simon; Toniutti, Lucile; Salmon, Frédéric; Hervouet, Catherine; Cardi, Céline; Mournet, Pierre; Guiougou, Chantal; Marius, Franck; Mina, Claude; Delos, Jean-Marie; Lambert, Frédéric; Madec, Camille; Efile, Jean-Claude; Cruaud, Corinne; Aury, Jean-Marc; D'Hont Angélique; Hoarau, Jean-Yves; Martin, Guillaume, 2024, "Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers", https://doi.org/10.18167/DVN1/FTM7GC, CIRAD Dataverse, V1
Data include: (i) variant call format (VCF) for 1129 triploid banana hybrids from biparental crosses implying 38 M. acuminata accessions genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing, (ii) a table (TSV) presenting best linear u...
Genotyping_1129hybrids_200Ksnps.vcf.gz
8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
Gzip Archive - 759,2 MB - MD5: 846dfdb752f869fae1bf874e7e65dca4
Variant Call Format (VCF) for 1129 triploid banana hybrids genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing
GWAS_summary_stats_Kc_model.tar.gz
8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
Gzip Archive - 897,4 MB - MD5: ff576752f521995903dc6cbc31d9483c
Archive (TAR.GZ) of genome-wide association study summary statistics obtained from the Kc model for 24 agro-morphological traits: pseudostem height, pseudostem girth, robustness index, number of leaves at flowering, number of leaves at harvesting, leaf blade length, leaf blade wi...
GWAS_summary_stats_K_model.tar.gz
8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
Gzip Archive - 897,4 MB - MD5: a98183f275761145bcfdf24a19ec79b5
Archive (TAR.GZ) of genome-wide association study summary statistics obtained from the standard K model for 24 agro-morphological traits: pseudostem height, pseudostem girth, robustness index, number of leaves at flowering, number of leaves at harvesting, leaf blade length, leaf...
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