Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.
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11 to 20 of 302 Results
Phenotyping_2727hybrids_24traits.tsv
8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
Tab-Separated Values - 1,3 MB - MD5: 560e948cdcee4b8150247a6e832f5bcd
Table (TSV) presenting best linear unbiased prediction of genotypic effects for 24 agro-morphological traits along with pedigree information for 2727 triploid banana hybrids, including four checks and 1464 hybrids which were genotyped-by-sequencing. Among the 1464 hybrids genotyp...
README.md
8 nov. 2024 - Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers
Markdown Text - 5,4 KB - MD5: ccb11091c22ba7bb7bd58d1c435d1168
Read-me
Genomics of white and black fonio millets : passport data, snp and kmer files.
4 nov. 2024
Kaczmarek, Thomas; Cubry, Philippe; Champion, Louis; Causse, Sandrine; Couderc, Sandrine; Orjuela, Julie; Uyoh, Edak A.; Oselebe, Happiness O.; Dachi, Stephen N.; Adje, Charlotte; Sekloka, Emmanuel; Achigan-Dako, Enoch G.; Ibrahim Bio Yerima, Abdou R.; Saidou, Sani; Bakasso, Yacoubou; Diop, Baye M.; Gueye, Mame C.; Agyare, Richard Y.; Adjebeng-Danquah, Joseph; Gueye, Mathieu; Wieringa, Jan J.; Vigouroux, Yves; Billot, Claire; Barnaud, Adeline; Leclerc, Christian, 2024, "Genomics of white and black fonio millets : passport data, snp and kmer files.", https://doi.org/10.18167/DVN1/OYTQO6, CIRAD Dataverse, V1, UNF:6:Id37Yd1Os2wQVns323wx4g== [fileUNF]
Crop evolutionary history and domestication processes are key issues for better conservation and effective use of crop genetic diversity. In Western Africa, two small indigenous grain cereals are found, black and white fonio (Digitaria exilis and Digitaria iburua respectively). T...
all_chr_first_dataset_247samples_FILTERED_masking2DP_RemoveSite05missing_MAF005.vcf.gz
4 nov. 2024 - Genomics of white and black fonio millets : passport data, snp and kmer files.
Gzip Archive - 503,3 MB - MD5: 3b29a69918bb20cc82603b90912b884c
Principal VCF file used in the study
all_chr_first_dataset_247samples_FILTERED_masking2DP_RemoveSite05missing_MAF005.vcf.gz.tbi
4 nov. 2024 - Genomics of white and black fonio millets : passport data, snp and kmer files.
Gzip Archive - 345,6 KB - MD5: 4aae91aa248ad062c40770c46196b414
index of of VCF file
all_chr_first_dataset_247samples_FILTERED_masking2DP_RemoveSite05missing.vcf.gz
4 nov. 2024 - Genomics of white and black fonio millets : passport data, snp and kmer files.
Gzip Archive - 1,9 GB - MD5: 16774b262b8a351ad35864554d4a4689
all_chr_first_dataset_247samples_FILTERED_masking2DP_RemoveSite05missing.vcf.gz.tbi
4 nov. 2024 - Genomics of white and black fonio millets : passport data, snp and kmer files.
Gzip Archive - 442,6 KB - MD5: d364cce7e23d43711d6e8452463dd9c0
index of the vcf file
list247samples.tab
4 nov. 2024 - Genomics of white and black fonio millets : passport data, snp and kmer files.
Tabular Data - 2,7 KB - 1 Variables, 246 Observations - UNF:6:Id37Yd1Os2wQVns323wx4g==
List of the 247 Digitaria accessions
output_file.762.bed
4 nov. 2024 - Genomics of white and black fonio millets : passport data, snp and kmer files.
PLINK Binary - 59,1 MB - MD5: 228fd0a57fb331b5e292ecd6cb85db4c
The presence-absence table (bed format)
output_file.762.bim
4 nov. 2024 - Genomics of white and black fonio millets : passport data, snp and kmer files.
Unknown - 40,1 MB - MD5: d5e26dce58d94c313a6772b9a04a4365
List of k-mers (bim format)
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