UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP Institut se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR AGAP Institut sont le CIRAD, l'INRAE, l'institut Agro et l'Université de Montpellier.

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1 to 10 of 59 Results

Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors 12 nov. 2024 Baurens, Franc-Christophe; Martin, Guillaume, 2024, "Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors", https://doi.org/10.18167/DVN1/6TLMD3, CIRAD Dataverse, V1 Sequence data associated with the paper "Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors" . Two types of data are present : Multifasta alignment of two genes that allows plylogenetic analysis of unknown banana cultivar contribu...
Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers 8 nov. 2024 Rio, Simon; Toniutti, Lucile; Salmon, Frédéric; Hervouet, Catherine; Cardi, Céline; Mournet, Pierre; Guiougou, Chantal; Marius, Franck; Mina, Claude; Delos, Jean-Marie; Lambert, Frédéric; Madec, Camille; Efile, Jean-Claude; Cruaud, Corinne; Aury, Jean-Marc; D'Hont Angélique; Hoarau, Jean-Yves; Martin, Guillaume, 2024, "Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers", https://doi.org/10.18167/DVN1/FTM7GC, CIRAD Dataverse, V1 Data include: (i) variant call format (VCF) for 1129 triploid banana hybrids from biparental crosses implying 38 M. acuminata accessions genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing, (ii) a table (TSV) presenting best linear u...
Genomics of white and black fonio millets : passport data, snp and kmer files. 4 nov. 2024 Kaczmarek, Thomas; Cubry, Philippe; Champion, Louis; Causse, Sandrine; Couderc, Sandrine; Orjuela, Julie; Uyoh, Edak A.; Oselebe, Happiness O.; Dachi, Stephen N.; Adje, Charlotte; Sekloka, Emmanuel; Achigan-Dako, Enoch G.; Ibrahim Bio Yerima, Abdou R.; Saidou, Sani; Bakasso, Yacoubou; Diop, Baye M.; Gueye, Mame C.; Agyare, Richard Y.; Adjebeng-Danquah, Joseph; Gueye, Mathieu; Wieringa, Jan J.; Vigouroux, Yves; Billot, Claire; Barnaud, Adeline; Leclerc, Christian, 2024, "Genomics of white and black fonio millets : passport data, snp and kmer files.", https://doi.org/10.18167/DVN1/OYTQO6, CIRAD Dataverse, V1, UNF:6:Id37Yd1Os2wQVns323wx4g== [fileUNF] Crop evolutionary history and domestication processes are key issues for better conservation and effective use of crop genetic diversity. In Western Africa, two small indigenous grain cereals are found, black and white fonio (Digitaria exilis and Digitaria iburua respectively). T...
RNAseq dataset of Cavendish BSOLV infected plant (GWT-19) 5 sept. 2024 Chabannes, Matthieu, 2024, "RNAseq dataset of Cavendish BSOLV infected plant (GWT-19)", https://doi.org/10.18167/DVN1/YTRCBN, CIRAD Dataverse, V1 Deep sequencing of total RNA from Cavendish BSOLV infected banana plant
RNAseq dataset of PKW banana plant (GWT-18) 5 sept. 2024 Chabannes, Matthieu, 2024, "RNAseq dataset of PKW banana plant (GWT-18)", https://doi.org/10.18167/DVN1/L4LBY7, CIRAD Dataverse, V1 Deep sequencing of total RNA from Pisang Klutuk Wulung (PKW) banana plant
sRNA dataset of Cavendish AAA non infected plant (BPO-60) 30 août 2024 Chabannes, Matthieu, 2024, "sRNA dataset of Cavendish AAA non infected plant (BPO-60)", https://doi.org/10.18167/DVN1/5LFLWU, CIRAD Dataverse, V1 Deep sequencing of sRNA from AAA non infected cavendish plant (BPO-60)
sRNA dataset of PKWxPKW banana plant (GWT-9) 30 août 2024 Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-9)", https://doi.org/10.18167/DVN1/9IHYTJ, CIRAD Dataverse, V1 Deep sequencing of sRNA from self-pollinated PKW plant. Endogenous banana streak virus (eBSV) genotype for GWT-9 is (OL1 + OL2 ; GF7 + GF9) where OL1 stands for the infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-1) and OL2 for the non-infective allele (eB...
sRNA dataset of PKWxPKW banana plant (GWT-10) 30 août 2024 Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-10)", https://doi.org/10.18167/DVN1/JHKGIO, CIRAD Dataverse, V1 Deep sequencing of sRNA from self-pollinated PKW plant GWT-10 is homozygous for the non-infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-2), the non-infective allele of endogenous Banana streak Goldfinger virus (eBSGFV-9) and the endogenous Banana streak Im...
sRNA dataset of PKWxPKW banana plant (GWT-11) 30 août 2024 Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-11)", https://doi.org/10.18167/DVN1/LB5HTS, CIRAD Dataverse, V1 Deep sequencing of sRNA from self pollinated PKW plant GWT-11 is homozygous for the non-infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-2), heterozygous for the endogenous Banana streak Goldfinger virus with the non-infective (eBSGFV-9) and the infective (...
sRNA dataset of PKWxPKW banana plant (GWT-12) 30 août 2024 Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-12)", https://doi.org/10.18167/DVN1/YKFVR1, CIRAD Dataverse, V1 Deep sequencing of sRNA from self-pollinated PKW plant GWT-12 is homozygous for the infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-1), homozygous for the non-infective allele of endogenous Banana streak Goldfinger virus (eBSGFV-9) and homozygous for the e...

Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors

12 nov. 2024

Baurens, Franc-Christophe; Martin, Guillaume, 2024, "Transposable element datasets and gene phylogeny to study Genome assemblies of Musa wild banana ancestors", https://doi.org/10.18167/DVN1/6TLMD3, CIRAD Dataverse, V1

Sequence data associated with the paper "Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors" . Two types of data are present : Multifasta alignment of two genes that allows plylogenetic analysis of unknown banana cultivar contribu...

Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers

8 nov. 2024

Rio, Simon; Toniutti, Lucile; Salmon, Frédéric; Hervouet, Catherine; Cardi, Céline; Mournet, Pierre; Guiougou, Chantal; Marius, Franck; Mina, Claude; Delos, Jean-Marie; Lambert, Frédéric; Madec, Camille; Efile, Jean-Claude; Cruaud, Corinne; Aury, Jean-Marc; D'Hont Angélique; Hoarau, Jean-Yves; Martin, Guillaume, 2024, "Genotypic data, phenotypic data and GWAS summary statistics for 1129 triploid banana hybrids evaluated for 24 agro-morphological traits in Guadeloupe (2011-2016) and genotyped-by-sequencing for 200K single-nucleotide-polymorphism markers", https://doi.org/10.18167/DVN1/FTM7GC, CIRAD Dataverse, V1

Data include: (i) variant call format (VCF) for 1129 triploid banana hybrids from biparental crosses implying 38 M. acuminata accessions genotyped for 200K bi-allelic single nucleotide polymorphisms obtained by genotyping-by-sequencing, (ii) a table (TSV) presenting best linear u...

Genomics of white and black fonio millets : passport data, snp and kmer files.

4 nov. 2024

Kaczmarek, Thomas; Cubry, Philippe; Champion, Louis; Causse, Sandrine; Couderc, Sandrine; Orjuela, Julie; Uyoh, Edak A.; Oselebe, Happiness O.; Dachi, Stephen N.; Adje, Charlotte; Sekloka, Emmanuel; Achigan-Dako, Enoch G.; Ibrahim Bio Yerima, Abdou R.; Saidou, Sani; Bakasso, Yacoubou; Diop, Baye M.; Gueye, Mame C.; Agyare, Richard Y.; Adjebeng-Danquah, Joseph; Gueye, Mathieu; Wieringa, Jan J.; Vigouroux, Yves; Billot, Claire; Barnaud, Adeline; Leclerc, Christian, 2024, "Genomics of white and black fonio millets : passport data, snp and kmer files.", https://doi.org/10.18167/DVN1/OYTQO6, CIRAD Dataverse, V1, UNF:6:Id37Yd1Os2wQVns323wx4g== [fileUNF]

Crop evolutionary history and domestication processes are key issues for better conservation and effective use of crop genetic diversity. In Western Africa, two small indigenous grain cereals are found, black and white fonio (Digitaria exilis and Digitaria iburua respectively). T...

RNAseq dataset of Cavendish BSOLV infected plant (GWT-19)

5 sept. 2024

Chabannes, Matthieu, 2024, "RNAseq dataset of Cavendish BSOLV infected plant (GWT-19)", https://doi.org/10.18167/DVN1/YTRCBN, CIRAD Dataverse, V1

Deep sequencing of total RNA from Cavendish BSOLV infected banana plant

RNAseq dataset of PKW banana plant (GWT-18)

5 sept. 2024

Chabannes, Matthieu, 2024, "RNAseq dataset of PKW banana plant (GWT-18)", https://doi.org/10.18167/DVN1/L4LBY7, CIRAD Dataverse, V1

Deep sequencing of total RNA from Pisang Klutuk Wulung (PKW) banana plant

sRNA dataset of Cavendish AAA non infected plant (BPO-60)

30 août 2024

Chabannes, Matthieu, 2024, "sRNA dataset of Cavendish AAA non infected plant (BPO-60)", https://doi.org/10.18167/DVN1/5LFLWU, CIRAD Dataverse, V1

Deep sequencing of sRNA from AAA non infected cavendish plant (BPO-60)

sRNA dataset of PKWxPKW banana plant (GWT-9)

30 août 2024

Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-9)", https://doi.org/10.18167/DVN1/9IHYTJ, CIRAD Dataverse, V1

Deep sequencing of sRNA from self-pollinated PKW plant. Endogenous banana streak virus (eBSV) genotype for GWT-9 is (OL1 + OL2 ; GF7 + GF9) where OL1 stands for the infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-1) and OL2 for the non-infective allele (eB...

sRNA dataset of PKWxPKW banana plant (GWT-10)

30 août 2024

Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-10)", https://doi.org/10.18167/DVN1/JHKGIO, CIRAD Dataverse, V1

Deep sequencing of sRNA from self-pollinated PKW plant GWT-10 is homozygous for the non-infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-2), the non-infective allele of endogenous Banana streak Goldfinger virus (eBSGFV-9) and the endogenous Banana streak Im...

sRNA dataset of PKWxPKW banana plant (GWT-11)

30 août 2024

Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-11)", https://doi.org/10.18167/DVN1/LB5HTS, CIRAD Dataverse, V1

Deep sequencing of sRNA from self pollinated PKW plant GWT-11 is homozygous for the non-infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-2), heterozygous for the endogenous Banana streak Goldfinger virus with the non-infective (eBSGFV-9) and the infective (...

sRNA dataset of PKWxPKW banana plant (GWT-12)

30 août 2024

Chabannes, Matthieu, 2024, "sRNA dataset of PKWxPKW banana plant (GWT-12)", https://doi.org/10.18167/DVN1/YKFVR1, CIRAD Dataverse, V1

Deep sequencing of sRNA from self-pollinated PKW plant GWT-12 is homozygous for the infective allele of endogenous Banana streak Obino l'Ewai virus (eBSOLV-1), homozygous for the non-infective allele of endogenous Banana streak Goldfinger virus (eBSGFV-9) and homozygous for the e...

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