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231 to 240 of 5 012 Results

estimates_t0_lc_500rep.csv 15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards" Comma Separated Values - 26,5 MB - MD5: 5b4fd6d6ef0845f0ddef138b290fff50 Data The 500 replicates of t0 estimates used in the analyses presented in the article, and the associated lc values estimated with Siland.
gpboost_example.R 15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards" R Syntax - 16,5 KB - MD5: 04313d70dd47569246569fa98331fb20 Code From one replicate of the dataset, this script presents the main steps in using of GPboost in the article (i.e. tuning the hyperparameters, training the model and prediction).
gpboost_parameter_grid.RDS 15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards" Gzip Archive - 180 B - MD5: 716b2584366c138c086aab8c89e486c4 The grid of gpboost hyperparameter values (learning rate, minimum data in leaf, maximum depth) used during the hyperparameter tuning step.
MeanAbundancePerOrchard_2012.csv 15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards" Comma Separated Values - 13,0 KB - MD5: 77b5028a9e3ee52775a1b8fece8038b7 Data Input data for t0 estimation, i.e. one file per year containing the mean abundance values of B. dorsalis per week for each orchard (average of captures per week and orchard).
MeanAbundancePerOrchard_2013.csv 15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards" Comma Separated Values - 14,7 KB - MD5: d7df444a7be63e0896ae99c777e6d60c Data Input data for t0 estimation, i.e. one file per year containing the mean abundance values of B. dorsalis per week for each orchard (average of captures per week and orchard).
MeanAbundancePerOrchard_2014.csv 15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards" Comma Separated Values - 13,5 KB - MD5: 0d4f7fb1767b3b9d4735aadb5fe7a935 Data Input data for t0 estimation, i.e. one file per year containing the mean abundance values of B. dorsalis per week for each orchard (average of captures per week and orchard).
popfit_t0_estimation.r 15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards" R Syntax - 14,7 KB - MD5: d3225aedcddec994de85fefbb6634bb0 Code This script was used to estimate the demographic variable t0.
README.txt 15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards" Plain Text - 5,1 KB - MD5: 0f6b83502d5d3f35e88399e1af9b6e75 Docs Description of the content of the dataverse
siland_example.R 15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards" R Syntax - 9,1 KB - MD5: de1e48610199323bf1db26158daa99bf Code This script allows to estimate the landscape influence on a replicate of t0 estimates of the land use categories from the land use map.
siland_parameters.txt 15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards" Plain Text - 279 B - MD5: e561562259520908180429227682725f Data Values of the Siland parameters (init, wd, maxD) used in the article (selected with a parameter tuning step not presented here but described in the article).

estimates_t0_lc_500rep.csv

15 juil. 2024 - Data and Rscripts for: "Hierarchizing multiscale environmental effects on agricultural pest population dynamics: a case study on the annual onset of Bactrocera dorsalis population growth in Senegalese orchards"

Comma Separated Values - 26,5 MB -

Data

The 500 replicates of t0 estimates used in the analyses presented in the article, and the associated lc values estimated with Siland.

gpboost_example.R

R Syntax - 16,5 KB -

Code

From one replicate of the dataset, this script presents the main steps in using of GPboost in the article (i.e. tuning the hyperparameters, training the model and prediction).

gpboost_parameter_grid.RDS

Gzip Archive - 180 B -

The grid of gpboost hyperparameter values (learning rate, minimum data in leaf, maximum depth) used during the hyperparameter tuning step.

MeanAbundancePerOrchard_2012.csv

Comma Separated Values - 13,0 KB -

Data

Input data for t0 estimation, i.e. one file per year containing the mean abundance values of B. dorsalis per week for each orchard (average of captures per week and orchard).

MeanAbundancePerOrchard_2013.csv

Comma Separated Values - 14,7 KB -

Data

Input data for t0 estimation, i.e. one file per year containing the mean abundance values of B. dorsalis per week for each orchard (average of captures per week and orchard).

MeanAbundancePerOrchard_2014.csv

Comma Separated Values - 13,5 KB -

Data

Input data for t0 estimation, i.e. one file per year containing the mean abundance values of B. dorsalis per week for each orchard (average of captures per week and orchard).

popfit_t0_estimation.r

R Syntax - 14,7 KB -

Code

This script was used to estimate the demographic variable t0.

README.txt

Plain Text - 5,1 KB -

Docs

Description of the content of the dataverse

siland_example.R

R Syntax - 9,1 KB -

Code

This script allows to estimate the landscape influence on a replicate of t0 estimates of the land use categories from the land use map.

siland_parameters.txt

Plain Text - 279 B -

Data

Values of the Siland parameters (init, wd, maxD) used in the article (selected with a parameter tuning step not presented here but described in the article).

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