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141 to 150 of 809 Results
Medium density genotyping dataset of 39 cattle from five West African breeds, associated to the article "A Comparison of Phenotypic Traits Related to Trypanotolerance in Five West African Cattle Breeds Highlights the Value of Shorthorn Taurine Breeds" (Berthier et al 2015)
2 déc. 2022 - UMR INTERTRYP
Thévenon, Sophie, 2022, "Medium density genotyping dataset of 39 cattle from five West African breeds, associated to the article "A Comparison of Phenotypic Traits Related to Trypanotolerance in Five West African Cattle Breeds Highlights the Value of Shorthorn Taurine Breeds" (Berthier et al 2015)", https://doi.org/10.18167/DVN1/APTZOC, CIRAD Dataverse, V1, UNF:6:YCYOQEERwlOPbFR85K9rtg== [fileUNF]
This dataset consists of genotypes of 39 animals belonging to five cattle breeds genotyped using the Illumina BovineSNP50 chip assay v2 [39] at the INRA Labogena platform (Jouy-en-Josas, France) using standard procedures. The animals were further infected by Trypanosoma congolens...
AATTOL_metadata_animal.tab
2 déc. 2022 - Medium density genotyping dataset of 39 cattle from five West African breeds, associated to the article "A Comparison of Phenotypic Traits Related to Trypanotolerance in Five West African Cattle Breeds Highlights the Value of Shorthorn Taurine Breeds" (Berthier et al 2015)
Tabular Data - 1,1 KB - 1 Variables, 39 Observations - UNF:6:YCYOQEERwlOPbFR85K9rtg==
Data
file containing the breed name, the breed code of the animals and two individual identifiers: Animal code as used in Berthier et al 2015 and in GEO GSE197108 dataset; and Animal ID as used in the genotyping file
cattle__54229variants__39individuals.ped
2 déc. 2022 - Medium density genotyping dataset of 39 cattle from five West African breeds, associated to the article "A Comparison of Phenotypic Traits Related to Trypanotolerance in Five West African Cattle Breeds Highlights the Value of Shorthorn Taurine Breeds" (Berthier et al 2015)
Unknown - 8,1 MB - MD5: 4f36457517bb8c027e514ea6c5eca96e
Data
genotyping data file named (39 rows, 108464 columns) that contains, for each individual, six information columns (Breed code, Animal ID and four columns with data coded 0 or U) and the genotypes (alleles 1 and 2, ACGT Illumina TOP format) for the 54229 SNPs.
cattle__54229variants.map
2 déc. 2022 - Medium density genotyping dataset of 39 cattle from five West African breeds, associated to the article "A Comparison of Phenotypic Traits Related to Trypanotolerance in Five West African Cattle Breeds Highlights the Value of Shorthorn Taurine Breeds" (Berthier et al 2015)
Unknown - 1,7 MB - MD5: ec27291dde99bfab017024bea7d202e8
Data
SNP map file named (54229 rows, 4 columns) that contains for each SNP, the autosome number, the SNP name, a column with data coded 0 and the SNP position on autosome. SNP are mapped on the bovine genome UMD3.1 assembly.
Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance
2 déc. 2022 - UMR INTERTRYP
Thévenon, Sophie, 2022, "Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance", https://doi.org/10.18167/DVN1/L9SHAX, CIRAD Dataverse, V1, UNF:6:wpyUSJA6nDclMtU/CKcEAA== [fileUNF]
Gene expression data, scripts for bioinformatic and statistical analyses, and output tables related to the paper entitled “Whole blood transcriptome profiles of trypanotolerant and trypanosusceptible cattle highlight a differential modulation of metabolism and immune response dur...
AATTOL_bioinformatic_steps.sh
2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance
Shell Script - 5,6 KB - MD5: 20aecf6252bcb83508877b77c9bb4b1f
Code
script: This file describes the bioinformatic steps of the RNA-seq analysis (mapping, gene count)
AATTOL_IPA_EdgeR_108b_Nested_Comp15_CanPath.tab
2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance
Tabular Data - 66,3 KB - 16 Variables, 363 Observations - UNF:6:jtQhSAP9C4+vXZ8EzW9cgQ==
Data
Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the canonical pathways
AATTOL_IPA_EdgeR_108b_Nested_Comp15_DisFun.tab
2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance
Tabular Data - 293,3 KB - 16 Variables, 2653 Observations - UNF:6:99YQhS7ZgnnpkQOfn7GBLQ==
Data
Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the diseases and functions, two sheets
AATTOL_IPA_EdgeR_108b_Nested_Comp15_UpStream.tab
2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance
Tabular Data - 254,8 KB - 16 Variables, 3774 Observations - UNF:6:qMmVU3QvR12K8sjIWutGRw==
Data
Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the upstream regulators, two sheets
AATTOL_IPA_edger_659g_allBreeds_13107_nested.tab
2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance
Tabular Data - 82,3 KB - 9 Variables, 164 Observations - UNF:6:DIKzyup99IhhktufmtdQ3Q==
Data
Output from IPA analysis for the input file edger_659g_allBreeds_13107_nested_IN_IPA.txt, three sheets
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