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Publication Year: 2022

101 to 110 of 659 Results

cattle__54229variants__39individuals.ped 2 déc. 2022 - Medium density genotyping dataset of 39 cattle from five West African breeds, associated to the article "A Comparison of Phenotypic Traits Related to Trypanotolerance in Five West African Cattle Breeds Highlights the Value of Shorthorn Taurine Breeds" (Berthier et al 2015) Unknown - 8,1 MB - MD5: 4f36457517bb8c027e514ea6c5eca96e Data genotyping data file named (39 rows, 108464 columns) that contains, for each individual, six information columns (Breed code, Animal ID and four columns with data coded 0 or U) and the genotypes (alleles 1 and 2, ACGT Illumina TOP format) for the 54229 SNPs.
cattle__54229variants.map 2 déc. 2022 - Medium density genotyping dataset of 39 cattle from five West African breeds, associated to the article "A Comparison of Phenotypic Traits Related to Trypanotolerance in Five West African Cattle Breeds Highlights the Value of Shorthorn Taurine Breeds" (Berthier et al 2015) Unknown - 1,7 MB - MD5: ec27291dde99bfab017024bea7d202e8 Data SNP map file named (54229 rows, 4 columns) that contains for each SNP, the autosome number, the SNP name, a column with data coded 0 and the SNP position on autosome. SNP are mapped on the bovine genome UMD3.1 assembly.
AATTOL_bioinformatic_steps.sh 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Shell Script - 5,6 KB - MD5: 20aecf6252bcb83508877b77c9bb4b1f Code script: This file describes the bioinformatic steps of the RNA-seq analysis (mapping, gene count)
AATTOL_IPA_EdgeR_108b_Nested_Comp15_CanPath.tab 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Tabular Data - 66,3 KB - 16 Variables, 363 Observations - UNF:6:jtQhSAP9C4+vXZ8EzW9cgQ== Data Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the canonical pathways
AATTOL_IPA_EdgeR_108b_Nested_Comp15_DisFun.tab 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Tabular Data - 293,3 KB - 16 Variables, 2653 Observations - UNF:6:99YQhS7ZgnnpkQOfn7GBLQ== Data Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the diseases and functions, two sheets
AATTOL_IPA_EdgeR_108b_Nested_Comp15_UpStream.tab 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Tabular Data - 254,8 KB - 16 Variables, 3774 Observations - UNF:6:qMmVU3QvR12K8sjIWutGRw== Data Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the upstream regulators, two sheets
AATTOL_IPA_edger_659g_allBreeds_13107_nested.tab 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Tabular Data - 82,3 KB - 9 Variables, 164 Observations - UNF:6:DIKzyup99IhhktufmtdQ3Q== Data Output from IPA analysis for the input file edger_659g_allBreeds_13107_nested_IN_IPA.txt, three sheets
AATTOL_Readme.docx 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance MS Word - 16,9 KB - MD5: 79edef0eca494b8a30727c98ce95b253 Documentation readme
AATTOL_Readme.txt 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance Plain Text - 9,5 KB - MD5: 81f914549f8c26b93fe18aa8181665ac Documentation It lists the files present in the dataverse, and provides a short description.
AATTOL_R_script_RNAseq_STAR108_EgdeR.r 2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance R Syntax - 15,9 KB - MD5: eeb3c7989b88e2317e450c3c1c2557f9 Code script: R script to run the differential expression analysis

cattle__54229variants__39individuals.ped

2 déc. 2022 - Medium density genotyping dataset of 39 cattle from five West African breeds, associated to the article "A Comparison of Phenotypic Traits Related to Trypanotolerance in Five West African Cattle Breeds Highlights the Value of Shorthorn Taurine Breeds" (Berthier et al 2015)

Unknown - 8,1 MB -

Data

genotyping data file named (39 rows, 108464 columns) that contains, for each individual, six information columns (Breed code, Animal ID and four columns with data coded 0 or U) and the genotypes (alleles 1 and 2, ACGT Illumina TOP format) for the 54229 SNPs.

cattle__54229variants.map

Unknown - 1,7 MB -

Data

SNP map file named (54229 rows, 4 columns) that contains for each SNP, the autosome number, the SNP name, a column with data coded 0 and the SNP position on autosome. SNP are mapped on the bovine genome UMD3.1 assembly.

AATTOL_bioinformatic_steps.sh

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

Shell Script - 5,6 KB -

Code

script: This file describes the bioinformatic steps of the RNA-seq analysis (mapping, gene count)

AATTOL_IPA_EdgeR_108b_Nested_Comp15_CanPath.tab

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance

Tabular Data - 66,3 KB - 16 Variables, 363 Observations -

Data

Output from IPA analysis for the input files edger_*_3DPI_0_13107_nested_IN_IPA.txt concerning the canonical pathways

AATTOL_IPA_EdgeR_108b_Nested_Comp15_DisFun.tab

2 déc. 2022 - Whole blood transcriptome data of five West African cattle breeds before and during an infection by Trypanosoma congolense IL1180, inference on bovine trypanotolerance