UMR AGAP Institut

Pour répondre aux grands enjeux de l'agriculture méditerranéenne et tropicale, l'unité AGAP se donne comme ambition de mettre en synergie une grande diversité de compétences, d'approches et de ressources pour des plantes cultivées mieux adaptées à des agrosystèmes variés.
Les tutelles de l'UMR Agap sont le Cirad, l'Inra et Montpellier Sup'Agro.

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1 to 10 of 20 Results

Initiation to R for survey data analysis : an example with the analysis of crop diversity in Subsaharan Africa 1 févr. 2024 Guillerminet, Théo; Kaczmarek, Thomas; Billot, Claire; Barnaud, Adeline, 2024, "Initiation to R for survey data analysis : an example with the analysis of crop diversity in Subsaharan Africa", https://doi.org/10.18167/DVN1/TSJUUH, CIRAD Dataverse, V1 This initiation to survey data analysis with R was designed to be offered at a multi-stakeholders workshop within the EWA-BELT H2020 EU project (grant n°862848 ; ewabelt.eu). This training had two main objectives : The first objective was to do an initiation to data handling, cle...
Paramètres des fibres de bois de Pterocapus erinaceus du Togo, Niger, Burkina Faso mesurés en 2020 18 déc. 2023 Kossi Novinyo, Segla, 2023, "Paramètres des fibres de bois de Pterocapus erinaceus du Togo, Niger, Burkina Faso mesurés en 2020", https://doi.org/10.18167/DVN1/KKGFIY, CIRAD Dataverse, V1, UNF:6:kZeq7arpe14f9nz1IhsnHw== [fileUNF] Les données sont issues de mesures des paramètres des fibres de bois de Pterocapus erinaceus après macération des échantillons de bois récoltés en 2019. Les mesures ont été réalisées au microscope équipé d'un micromètre. Ces données ont été produites en 2020 au sein de l'unité BI...
Sorghum WCA-BCNAM data 13 déc. 2023 - Genetique_Innovation_Varietale Garin, Vincent; Diallo, Chiaka; Tekete, Mohamed; Thera, Korotimi; Guitton, Baptiste; Dagno, Karim; Diallo, Abdoulaye G.; Kouressy, Mamoutou; Leiser, Willmar; Rattunde, Fred; Sissoko, Ibrahima; Toure, Aboubacar; Nebie, Baloua; Samake, Moussa; Kholova, Jana; Frouin, Julien; Pot, David; Vaksmann, Michel; Weltzien, Eva; Teme, Niaba; Rami, Jean-Francois, 2023, "Sorghum WCA-BCNAM data", https://doi.org/10.18167/DVN1/TZVGLS, CIRAD Dataverse, V2 Data used for the publication: "Characterization of adaptation mechanisms in sorghum using a multi-reference back-cross nested association mapping design and envirotyping" Genetic data: 51'545 SNP markers for 3901 genotypes from three population (Grinkan, Kenin-Keni, Lata3) Pheno...
Measurement of arsenic levels in the leaves and seeds of a panel of 300 japonica varieties and GBS genotyping of 228 of them 6 déc. 2023 - Genetique_Innovation_Varietale Frouin, Julien; Labeyrie, Axel; Boisnard, Arnaud; Sacchi, Gian Attilio; Ahmadi, Nourollah, 2023, "Measurement of arsenic levels in the leaves and seeds of a panel of 300 japonica varieties and GBS genotyping of 228 of them", https://doi.org/10.18167/DVN1/E4X5VD, CIRAD Dataverse, V1 A measurement of arsenic levels in the leaves and seeds of a panel of 300 japonica rice varieties was carried out in 2014 in Camargue, France. With the aim of testing genomic prediction, GBS genotyping (ApekI enzyme) of 228 of them was also done.
Industrial, biochemical and histochemical properties of sorghum stems harvested from 5 trials in France 8 nov. 2023 - Genetique_Innovation_Varietale Pot David; Thomas Hélène Laurence; Jaffuel Sylvie; Christelle Baptiste; Laurent Bonnal; Gilles Trouche; Denis Bastianelli; Eric Latrille; Angélique Berger; Caroline Calatayud; Céline Chauvergne; Virginie Rossard; Patrice Jeanson; Joël Alcouffe; Hélène Carrère, 2023, "Industrial, biochemical and histochemical properties of sorghum stems harvested from 5 trials in France", https://doi.org/10.18167/DVN1/JYQLEK, CIRAD Dataverse, V1 This dataset contains phenotypic information regarding the industrial properties (anaerobic digestion, combustion, animal digestibility), stem biochemical composition and internode anatomy of 57 genotypes that have been cultivated in 5 sites in France between 2012 and 2014. This...
Phenotypic data of the CNA6 population from cycle 3 to cycle 7 8 nov. 2023 - Genetique_Innovation_Varietale Pereira de Castro, Adriano; Breseghello, Flávio; Volpi Furtini, Isabela; Marico Utumi, Marley; Almeida Pereira, José; Cao, Tuong-Vi; Bartholomé, Jérôme, 2023, "Phenotypic data of the CNA6 population from cycle 3 to cycle 7", https://doi.org/10.18167/DVN1/O9TJEO, CIRAD Dataverse, V1, UNF:6:58koioPKJ0jJHqyKSVqCaw== [fileUNF] The CNA6 population, evaluated over five cycles (3 to 7) of selection, including 20 field trials, was used to assess the realized genetic gain. The experimental data used in this study was generated in multisite trials conducted on S0:2 families from five cycles of recurrent sele...
Genomic selection for salinity tolerance in japonica rice 14 sept. 2023 - Genetique_Innovation_Varietale Bartholomé, Jérôme; Frouin, Julien; Brottier, Laurent; Cao-Hamadou, Tuong-Vi; Boisnard, Arnaud; Ahmadi, nourollah; Courtois, Brigitte, 2023, "Genomic selection for salinity tolerance in japonica rice", https://doi.org/10.18167/DVN1/O1AYGP, CIRAD Dataverse, V2, UNF:6:g/WOxnia0xFOtDfnsL22Ww== [fileUNF] A reference panel of 239 japonica accessions and 393 lines of breeding population with 16993 SNPs grown in control and mild salinity stress conditions were evaluated at the vegetative stage for eight morphological traits and ion mass fractions (Na and K).
de Verdal et al. Optimization of multi-generation multi-location genomic prediction models for recurrent genomic selection in an upland rice population 7 sept. 2023 - Genetique_Innovation_Varietale de Verdal, Hugues; BAERTSCHI, Cédric; FROUIN Julien; QUINTERO Constanza; OSPINA Yolima; ALVAREZ Maria Fernanda; CAO Tuong-Vi Cao; BARTHOLOME, Jérôme; GRENIER Cécile, 2023, "de Verdal et al. Optimization of multi-generation multi-location genomic prediction models for recurrent genomic selection in an upland rice population", https://doi.org/10.18167/DVN1/A7DEHI, CIRAD Dataverse, V2 These data correspond to the phenotypic and genomic datafiles used for the paper entitled "Optimization of multi-generation multi-location genomic prediction models for recurrent genomic selection in an upland rice population"
Dioscorea alata orthologous groups identified by comparative genomics approach 30 mai 2023 Zotta Mota Ana; Dossa Komivi; Lechaudel Mathieu; Cornet Denis; Mournet Pierre; Lopez David; Chaïr Hana, 2023, "Dioscorea alata orthologous groups identified by comparative genomics approach", https://doi.org/10.18167/DVN1/A4OYRU, CIRAD Dataverse, V1, UNF:6:Mm4r24Pt1/V2jUjXVOvOQw== [fileUNF] Yams are important tubers widely consumed in developing countries in various forms, mainly boiled, pounded and fried. Tuber quality is a key criterion for acceptance by the various actors in the value chain. However, the genetics of yam tuber quality has not yet been comprehensiv...
Genotyping of 600 rice accessions from 3 genetic group (O. sativa indica, O. sativa japonica and O. glaberrima) collected in Conakry Guinea between 1979 and 2011 29 mars 2023 - Genetique_Innovation_Varietale Ahmadi, Nourollah; Barry, Mamadou Billo; Frouin, Julien; De Navascues, Miguel; Touré, Mamadou Aminata, 2023, "Genotyping of 600 rice accessions from 3 genetic group (O. sativa indica, O. sativa japonica and O. glaberrima) collected in Conakry Guinea between 1979 and 2011", https://doi.org/10.18167/DVN1/NKHS1U, CIRAD Dataverse, V1 Genotyping By Sequencing with ApekI enzyme of 600 accessions from 3 genetic group (O. sativa indica, O. sativa japonica and O. glaberrima). Plant material was collected through two collection campaigns in Conakry Guinea. The first campaign took place in 1979 and 1982 (Bezançon et...

Initiation to R for survey data analysis : an example with the analysis of crop diversity in Subsaharan Africa

1 févr. 2024

Guillerminet, Théo; Kaczmarek, Thomas; Billot, Claire; Barnaud, Adeline, 2024, "Initiation to R for survey data analysis : an example with the analysis of crop diversity in Subsaharan Africa", https://doi.org/10.18167/DVN1/TSJUUH, CIRAD Dataverse, V1

This initiation to survey data analysis with R was designed to be offered at a multi-stakeholders workshop within the EWA-BELT H2020 EU project (grant n°862848 ; ewabelt.eu). This training had two main objectives : The first objective was to do an initiation to data handling, cle...

Paramètres des fibres de bois de Pterocapus erinaceus du Togo, Niger, Burkina Faso mesurés en 2020

18 déc. 2023

Kossi Novinyo, Segla, 2023, "Paramètres des fibres de bois de Pterocapus erinaceus du Togo, Niger, Burkina Faso mesurés en 2020", https://doi.org/10.18167/DVN1/KKGFIY, CIRAD Dataverse, V1, UNF:6:kZeq7arpe14f9nz1IhsnHw== [fileUNF]

Les données sont issues de mesures des paramètres des fibres de bois de Pterocapus erinaceus après macération des échantillons de bois récoltés en 2019. Les mesures ont été réalisées au microscope équipé d'un micromètre. Ces données ont été produites en 2020 au sein de l'unité BI...

Sorghum WCA-BCNAM data

13 déc. 2023 - Genetique_Innovation_Varietale

Garin, Vincent; Diallo, Chiaka; Tekete, Mohamed; Thera, Korotimi; Guitton, Baptiste; Dagno, Karim; Diallo, Abdoulaye G.; Kouressy, Mamoutou; Leiser, Willmar; Rattunde, Fred; Sissoko, Ibrahima; Toure, Aboubacar; Nebie, Baloua; Samake, Moussa; Kholova, Jana; Frouin, Julien; Pot, David; Vaksmann, Michel; Weltzien, Eva; Teme, Niaba; Rami, Jean-Francois, 2023, "Sorghum WCA-BCNAM data", https://doi.org/10.18167/DVN1/TZVGLS, CIRAD Dataverse, V2

Data used for the publication: "Characterization of adaptation mechanisms in sorghum using a multi-reference back-cross nested association mapping design and envirotyping" Genetic data: 51'545 SNP markers for 3901 genotypes from three population (Grinkan, Kenin-Keni, Lata3) Pheno...

Measurement of arsenic levels in the leaves and seeds of a panel of 300 japonica varieties and GBS genotyping of 228 of them

6 déc. 2023 - Genetique_Innovation_Varietale

Frouin, Julien; Labeyrie, Axel; Boisnard, Arnaud; Sacchi, Gian Attilio; Ahmadi, Nourollah, 2023, "Measurement of arsenic levels in the leaves and seeds of a panel of 300 japonica varieties and GBS genotyping of 228 of them", https://doi.org/10.18167/DVN1/E4X5VD, CIRAD Dataverse, V1

A measurement of arsenic levels in the leaves and seeds of a panel of 300 japonica rice varieties was carried out in 2014 in Camargue, France. With the aim of testing genomic prediction, GBS genotyping (ApekI enzyme) of 228 of them was also done.

Industrial, biochemical and histochemical properties of sorghum stems harvested from 5 trials in France

8 nov. 2023 - Genetique_Innovation_Varietale

Pot David; Thomas Hélène Laurence; Jaffuel Sylvie; Christelle Baptiste; Laurent Bonnal; Gilles Trouche; Denis Bastianelli; Eric Latrille; Angélique Berger; Caroline Calatayud; Céline Chauvergne; Virginie Rossard; Patrice Jeanson; Joël Alcouffe; Hélène Carrère, 2023, "Industrial, biochemical and histochemical properties of sorghum stems harvested from 5 trials in France", https://doi.org/10.18167/DVN1/JYQLEK, CIRAD Dataverse, V1

This dataset contains phenotypic information regarding the industrial properties (anaerobic digestion, combustion, animal digestibility), stem biochemical composition and internode anatomy of 57 genotypes that have been cultivated in 5 sites in France between 2012 and 2014. This...

Phenotypic data of the CNA6 population from cycle 3 to cycle 7

8 nov. 2023 - Genetique_Innovation_Varietale

Pereira de Castro, Adriano; Breseghello, Flávio; Volpi Furtini, Isabela; Marico Utumi, Marley; Almeida Pereira, José; Cao, Tuong-Vi; Bartholomé, Jérôme, 2023, "Phenotypic data of the CNA6 population from cycle 3 to cycle 7", https://doi.org/10.18167/DVN1/O9TJEO, CIRAD Dataverse, V1, UNF:6:58koioPKJ0jJHqyKSVqCaw== [fileUNF]

The CNA6 population, evaluated over five cycles (3 to 7) of selection, including 20 field trials, was used to assess the realized genetic gain. The experimental data used in this study was generated in multisite trials conducted on S0:2 families from five cycles of recurrent sele...

Genomic selection for salinity tolerance in japonica rice

14 sept. 2023 - Genetique_Innovation_Varietale

Bartholomé, Jérôme; Frouin, Julien; Brottier, Laurent; Cao-Hamadou, Tuong-Vi; Boisnard, Arnaud; Ahmadi, nourollah; Courtois, Brigitte, 2023, "Genomic selection for salinity tolerance in japonica rice", https://doi.org/10.18167/DVN1/O1AYGP, CIRAD Dataverse, V2, UNF:6:g/WOxnia0xFOtDfnsL22Ww== [fileUNF]

A reference panel of 239 japonica accessions and 393 lines of breeding population with 16993 SNPs grown in control and mild salinity stress conditions were evaluated at the vegetative stage for eight morphological traits and ion mass fractions (Na and K).

de Verdal et al. Optimization of multi-generation multi-location genomic prediction models for recurrent genomic selection in an upland rice population

7 sept. 2023 - Genetique_Innovation_Varietale

de Verdal, Hugues; BAERTSCHI, Cédric; FROUIN Julien; QUINTERO Constanza; OSPINA Yolima; ALVAREZ Maria Fernanda; CAO Tuong-Vi Cao; BARTHOLOME, Jérôme; GRENIER Cécile, 2023, "de Verdal et al. Optimization of multi-generation multi-location genomic prediction models for recurrent genomic selection in an upland rice population", https://doi.org/10.18167/DVN1/A7DEHI, CIRAD Dataverse, V2

These data correspond to the phenotypic and genomic datafiles used for the paper entitled "Optimization of multi-generation multi-location genomic prediction models for recurrent genomic selection in an upland rice population"

Dioscorea alata orthologous groups identified by comparative genomics approach

30 mai 2023

Zotta Mota Ana; Dossa Komivi; Lechaudel Mathieu; Cornet Denis; Mournet Pierre; Lopez David; Chaïr Hana, 2023, "Dioscorea alata orthologous groups identified by comparative genomics approach", https://doi.org/10.18167/DVN1/A4OYRU, CIRAD Dataverse, V1, UNF:6:Mm4r24Pt1/V2jUjXVOvOQw== [fileUNF]

Yams are important tubers widely consumed in developing countries in various forms, mainly boiled, pounded and fried. Tuber quality is a key criterion for acceptance by the various actors in the value chain. However, the genetics of yam tuber quality has not yet been comprehensiv...

Genotyping of 600 rice accessions from 3 genetic group (O. sativa indica, O. sativa japonica and O. glaberrima) collected in Conakry Guinea between 1979 and 2011

29 mars 2023 - Genetique_Innovation_Varietale

Ahmadi, Nourollah; Barry, Mamadou Billo; Frouin, Julien; De Navascues, Miguel; Touré, Mamadou Aminata, 2023, "Genotyping of 600 rice accessions from 3 genetic group (O. sativa indica, O. sativa japonica and O. glaberrima) collected in Conakry Guinea between 1979 and 2011", https://doi.org/10.18167/DVN1/NKHS1U, CIRAD Dataverse, V1

Genotyping By Sequencing with ApekI enzyme of 600 accessions from 3 genetic group (O. sativa indica, O. sativa japonica and O. glaberrima). Plant material was collected through two collection campaigns in Conakry Guinea. The first campaign took place in 1979 and 1982 (Bezançon et...

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